A flexible R package for nonnegative matrix factorization (Q33624159)

28 July 2017

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title

A flexible R package for nonnegative matrix factorization (English)

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28 July 2017

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Renaud Gaujoux

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28 July 2017

Cathal Seoighe

series ordinal

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28 July 2017

publication date

2 July 2010

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28 July 2017

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28 July 2017

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28 July 2017

page(s)

367

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Creative Commons Attribution 2.0 Generic

28 July 2017

start time

2 July 2010

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April 2022 Public Data File from Crossref

copyrighted

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April 2022 Public Data File from Crossref

describes a project that uses

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Automated multidimensional phenotypic profiling using large public microarray repositories

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912887

Non-negative matrix factorization for the analysis of complex gene expression data: identification of clinically relevant tumor subtypes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912887

Nonnegative matrix factorization: an analytical and interpretive tool in computational biology

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912887

Pattern expression nonnegative matrix factorization: algorithm and applications to blind source separation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912887

Sparse non-negative matrix factorizations via alternating non-negativity-constrained least squares for microarray data analysis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912887

Metagene projection for cross-platform, cross-species characterization of global transcriptional states

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912887

LS-NMF: a modified non-negative matrix factorization algorithm utilizing uncertainty estimates

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912887

Biclustering of gene expression data by Non-smooth Non-negative Matrix Factorization.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912887

Theme discovery from gene lists for identification and viewing of multiple functional groups

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912887

Bioconductor: open software development for computational biology and bioinformatics

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912887

Metagenes and molecular pattern discovery using matrix factorization

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912887

Subsystem identification through dimensionality reduction of large-scale gene expression data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912887

Learning the parts of objects by non-negative matrix factorization

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912887

Non-negative matrix factorization of gene expression profiles: a plug-in for BRB-ArrayTools

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912887

Position-dependent motif characterization using non-negative matrix factorization

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912887

Extracting gene expression profiles common to colon and pancreatic adenocarcinoma using simultaneous nonnegative matrix factorization.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912887

Nonsmooth nonnegative matrix factorization (nsNMF).

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912887

Improving molecular cancer class discovery through sparse non-negative matrix factorization

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912887

30 October 2018

Identifiers

DOI

10.1186/1471-2105-11-367

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journals/bmcbi/GaujouxS10

28 July 2017

DBLP publication ID

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DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

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28 July 2017

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