Transcriptional and translational regulatory responses to iron limitation in the globally distributed marine bacterium Candidatus pelagibacter ubique (Q33576952)

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English	Transcriptional and translational regulatory responses to iron limitation in the globally distributed marine bacterium Candidatus pelagibacter ubique	scientific article

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scholarly article

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Europe PubMed Central

PubMed publication ID

28 July 2017

Transcriptional and translational regulatory responses to iron limitation in the globally distributed marine bacterium Candidatus pelagibacter ubique (English)

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Europe PubMed Central

PubMed publication ID

28 July 2017

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Pelagibacter ubique

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Candidatus pelagibacter ubique

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Richard D. Smith

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Richard D Smith

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Therese R. W. Clauss

4

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Therese R Clauss

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Europe PubMed Central

PubMed publication ID

28 July 2017

5

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Mary S Lipton

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28 July 2017

Angela D Norbeck

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Angela D Norbeck

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28 July 2017

Carrie D Nicora

8

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Carrie D Nicora

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PubMed publication ID

28 July 2017

Stephen J. Giovannoni

10

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Stephen J Giovannoni

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PubMed publication ID

28 July 2017

author name string

Daniel P Smith

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Europe PubMed Central

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28 July 2017

Joshua B Kitner

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Europe PubMed Central

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28 July 2017

Michael S Schwalbach

6

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Europe PubMed Central

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28 July 2017

Laura Steindler

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28 July 2017

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publication date

5 May 2010

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Europe PubMed Central

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28 July 2017

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Europe PubMed Central

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28 July 2017

5

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Europe PubMed Central

PubMed publication ID

28 July 2017

5

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

e10487

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Europe PubMed Central

PubMed publication ID

28 July 2017

copyright license

Creative Commons Attribution 4.0 International

5 May 2010

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April 2022 Public Data File from Crossref

copyright status

0 references

Chemistry of marine ligands and siderophores

1 reference

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21 June 2018

Global signatures of protein and mRNA expression levels

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21 June 2018

The presence of the glycolysis operon in SAR11 genomes is positively correlated with ocean productivity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

The role of mRNA structure in translational control in bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

Identification of candidate structured RNAs in the marine organism 'Candidatus Pelagibacter ubique'

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas

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21 June 2018

Coding-sequence determinants of gene expression in Escherichia coli

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21 June 2018

Unique glycine-activated riboswitch linked to glycine-serine auxotrophy in SAR11

1 reference

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21 June 2018

RNA switches regulate initiation of translation in bacteria.

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21 June 2018

Post-transcriptional regulation of gene expression in response to iron deficiency: co-ordinated metabolic reprogramming by yeast mRNA-binding proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

The Bacillus subtilis iron-sparing response is mediated by a Fur-regulated small RNA and three small, basic proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

A massive phytoplankton bloom induced by an ecosystem-scale iron fertilization experiment in the equatorial Pacific Ocean

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

Proteomic analysis of stationary phase in the marine bacterium "Candidatus Pelagibacter ubique".

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

Integrative analyses of posttranscriptional regulation in the yeast Saccharomyces cerevisiae using transcriptomic and proteomic data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

Integrative analysis of transcriptomic and proteomic data: challenges, solutions and applications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

Fisher's combined p-value for detecting differentially expressed genes using Affymetrix expression arrays

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

Small RNAs controlling iron metabolism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

Control of Fur synthesis by the non-coding RNA RyhB and iron-responsive decoding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

Computational reconstruction of iron- and manganese-responsive transcriptional networks in alpha-proteobacteria

1 reference

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21 June 2018

Chemically etched open tubular and monolithic emitters for nanoelectrospray ionization mass spectrometry

1 reference

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21 June 2018

Bradyrhizobium japonicum senses iron through the status of haem to regulate iron homeostasis and metabolism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

Cellular regulation and molecular interactions of the ferritins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

Normalization approaches for removing systematic biases associated with mass spectrometry and label-free proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

The Iron control element, acting in positive and negative control of iron-regulated Bradyrhizobium japonicum genes, is a target for the Irr protein.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

Genome Streamlining in a Cosmopolitan Oceanic Bacterium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

Evidence for a second class of S-adenosylmethionine riboswitches and other regulatory RNA motifs in alpha-proteobacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

Ironing out the problem: new mechanisms of iron homeostasis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

Identification of the iron-responsive genes of Neisseria gonorrhoeae by microarray analysis in defined medium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

Global iron connections between desert dust, ocean biogeochemistry, and climate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

Global analysis of transcript and protein levels across the Plasmodium falciparum life cycle

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

Contribution of SAR11 bacteria to dissolved dimethylsulfoniopropionate and amino acid uptake in the North Atlantic ocean

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

Recognition of DNA by three ferric uptake regulator (Fur) homologs in Bacillus subtilis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

Identification of iron-activated and -repressed Fur-dependent genes by transcriptome analysis of Neisseria meningitidis group B.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

A novel DNA-binding site for the ferric uptake regulator (Fur) protein from Bradyrhizobium japonicum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

Bacterial iron homeostasis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

Architecture of a fur binding site: a comparative analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

Bacterial cold-shock proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

SAR11 clade dominates ocean surface bacterioplankton communities.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

Recognition of DNA by Fur: a reinterpretation of the Fur box consensus sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

Cultivation of the ubiquitous SAR11 marine bacterioplankton clade.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

Discordant protein and mRNA expression in lung adenocarcinomas

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

Control of transcription termination in bacteria by RNA-binding proteins that modulate RNA structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

Integrated genomic and proteomic analyses of a systematically perturbed metabolic network

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

Acquirement of cold sensitivity by quadruple deletion of the cspA family and its suppression by PNPase S1 domain in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

Role of CspC and CspE in regulation of expression of RpoS and UspA, the stress response proteins in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

A mesoscale phytoplankton bloom in the polar Southern Ocean stimulated by iron fertilization.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

Escherichia coli CspA-family RNA chaperones are transcription antiterminators

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

Fur positive regulation of iron superoxide dismutase in Escherichia coli: functional analysis of the sodB promoter

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

Transcription termination control in bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

Opening the iron box: transcriptional metalloregulation by the Fur protein.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

The bacterial irr protein is required for coordination of heme biosynthesis with iron availability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

Overproduction of three genes leads to camphor resistance and chromosome condensation in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

21 June 2018

Transport functions dominate the SAR11 metaproteome at low-nutrient extremes in the Sargasso Sea.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

31 October 2018

Characterization of the DNA-binding site in the ferric uptake regulator protein from Escherichia coli by UV crosslinking and mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

31 October 2018

Dimeric Brucella abortus Irr protein controls its own expression and binds haem

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

31 October 2018

The influence of cold shock proteins on transcription and translation studied in cell-free model systems.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

31 October 2018

Biomass production and assimilation of dissolved organic matter by SAR11 bacteria in the Northwest Atlantic Ocean

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

31 October 2018

Two heme binding sites are involved in the regulated degradation of the bacterial iron response regulator (Irr) protein.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

31 October 2018

Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

31 October 2018

A superfamily of proteins that contain the cold-shock domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864753

31 October 2018

Sequence-selective interactions with RNA by CspB, CspC and CspE, members of the CspA family of Escherichia coli

1 reference

https://pubmed.ncbi.nlm.nih.gov/20463970

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Assay of transcription antitermination by proteins of the CspA family

1 reference

https://pubmed.ncbi.nlm.nih.gov/20463970

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Iron regulation of siderophore biosynthesis and transport in Pseudomonas putida WCS358: involvement of a transcriptional activator and of the Fur protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/20463970

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ferritins: dynamic management of biological iron and oxygen chemistry

1 reference

https://pubmed.ncbi.nlm.nih.gov/20463970

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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10.1371/JOURNAL.PONE.0010487

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