Fungal secretome database: integrated platform for annotation of fungal secretomes (Q33530565)

27 July 2017

title

Fungal secretome database: integrated platform for annotation of fungal secretomes (English)

1 reference

27 July 2017

0 references

1 reference

Jaeyoung Choi

0 references

Jongsun Park

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Seogchan Kang

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Donghan Kim

1 reference

27 July 2017

Kyongyong Jung

series ordinal

1 reference

27 July 2017

Yong-Hwan Lee

series ordinal

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27 July 2017

language of work or name

English

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publication date

11 February 2010

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27 July 2017

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27 July 2017

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27 July 2017

page(s)

105

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Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

27 July 2017

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21 June 2018

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Genomic analysis of the basal lineage fungus Rhizopus oryzae reveals a whole-genome duplication

21 June 2018

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Evolution of pathogenicity and sexual reproduction in eight Candida genomes

21 June 2018

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21 June 2018

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Population genomics of domestic and wild yeasts

21 June 2018

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Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion

21 June 2018

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21 June 2018

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21 June 2018

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Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum

21 June 2018

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A catalog of neutral and deleterious polymorphism in yeast

21 June 2018

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Fungal cytochrome P450 database

21 June 2018

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Fungal secretomes--nature's toolbox for white biotechnology

21 June 2018

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Comparative genome analysis of filamentous fungi reveals gene family expansions associated with fungal pathogenesis

21 June 2018

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The genome sequence of the model ascomycete fungus Podospora anserina

21 June 2018

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The secretome of the maize pathogen Ustilago maydis

21 June 2018

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Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)

21 June 2018

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Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus

21 June 2018

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RXLR effector reservoir in two Phytophthora species is dominated by a single rapidly evolving superfamily with more than 700 members

21 June 2018

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The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis

21 June 2018

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FTFD: an informatics pipeline supporting phylogenomic analysis of fungal transcription factors

21 June 2018

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A molecular specificity code for the three mammalian KDEL receptors

21 June 2018

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Dothideomycete plant interactions illuminated by genome sequencing and EST analysis of the wheat pathogen Stagonospora nodorum

21 June 2018

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Dandruff-associated Malassezia genomes reveal convergent and divergent virulence traits shared with plant and human fungal pathogens

21 June 2018

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CFGP: a web-based, comparative fungal genomics platform.

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

Genome-wide analysis of T-DNA integration into the chromosomes of Magnaporthe oryzae

21 June 2018

1 reference

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The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization

21 June 2018

1 reference

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Expression analysis of extracellular proteins from Phanerochaete chrysosporium grown on different liquid and solid substrates

21 June 2018

1 reference

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A higher-level phylogenetic classification of the Fungi

21 June 2018

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WoLF PSORT: protein localization predictor

21 June 2018

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Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication

21 June 2018

1 reference

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Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes.

21 June 2018

1 reference

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Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis

21 June 2018

1 reference

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Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88

21 June 2018

1 reference

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A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

Phytophthora Genome Sequences Uncover Evolutionary Origins and Mechanisms of Pathogenesis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

Cell wall assembly in Saccharomyces cerevisiae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

Host-microbe interactions: shaping the evolution of the plant immune response

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

A catalogue of the effector secretome of plant pathogenic oomycetes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

Genome sequencing and analysis of Aspergillus oryzae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

Proteomic analysis of secreted proteins from Trichoderma harzianum. Identification of a fungal cell wall-induced aspartic protease.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

SPdb--a signal peptide database.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

Quorum sensing: cell-to-cell communication in bacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

The genome sequence of the rice blast fungus Magnaporthe grisea

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

Elevated evolutionary rates in the laboratory strain of Saccharomyces cerevisiae

21 June 2018

1 reference

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A host-targeting signal in virulence proteins reveals a secretome in malarial infection

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

Targeting malaria virulence and remodeling proteins to the host erythrocyte

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

Fungal degradation of wood: initial proteomic analysis of extracellular proteins of Phanerochaete chrysosporium grown on oak substrate

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

Genome evolution in yeasts

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

Improved prediction of signal peptides: SignalP 3.0

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

The diploid genome sequence of Candida albicans

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

Feature-based prediction of non-classical and leaderless protein secretion

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

The Ashbya gossypii Genome as a Tool for Mapping the Ancient Saccharomyces cerevisiae Genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

Finding Functional Features in Saccharomyces Genomes by Phylogenetic Footprinting

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

Sequencing and comparison of yeast species to identify genes and regulatory elements

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

An analysis of the Candida albicans genome database for soluble secreted proteins using computer-based prediction algorithms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

The genome sequence of the filamentous fungus Neurospora crassa

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

Genome sequence of the human malaria parasite Plasmodium falciparum

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

Subcellular localization of the yeast proteome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

The genome sequence of Schizosaccharomyces pombe

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

Finding nuclear localization signals

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

Secretory protein trafficking and organelle dynamics in living cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

Assembly and function of type III secretory systems

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

Predicting subcellular localization of proteins based on their N-terminal amino acid sequence

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

EMBOSS: the European Molecular Biology Open Software Suite

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

A hidden Markov model for predicting transmembrane helices in protein sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

A simple method for displaying the hydropathic character of a protein

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

Prediction of signal peptides in protein sequences by neural networks.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

A translocation signal for delivery of oomycete effector proteins into host plant cells

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

Adaptive evolution has targeted the C-terminal domain of the RXLR effectors of plant pathogenic oomycetes.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

Genome-wide functional analysis of pathogenicity genes in the rice blast fungus.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

Computational analysis of the Phanerochaete chrysosporium v2.0 genome database and mass spectrometry identification of peptides in ligninolytic cultures reveal complex mixtures of secreted proteins.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

The Phanerochaete chrysosporium secretome: database predictions and initial mass spectrometry peptide identifications in cellulose-grown medium.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

Fingerprinting Trichoderma reesei hydrolases in a commercial cellulase preparation

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

Structure and dynamics of the fusion pores in live GH-secreting cells revealed using atomic force microscopy.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

Genomic exploration of the hemiascomycetous yeasts: 16. Candida tropicalis

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

Comparative proteomics of extracellular proteinsin vitro andin planta from the pathogenic fungusFusarium graminearum

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836287

Structure, isolation, composition and reconstitution of the neuronal fusion pore

31 October 2018

1 reference

12 December 2020

Crucial role of antioxidant proteins and hydrolytic enzymes in pathogenicity of Penicillium expansum: analysis based on proteomics approach

1 reference

12 December 2020

Whole genome comparison of theA. fumigatusfamily

1 reference

12 December 2020

Whole genome comparison of Aspergillus flavus and A. oryzae

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2164-11-105

1 reference

Dimensions Publication ID

27 July 2017

0 references

1 reference

27 July 2017

1 reference