Molecular evolution of the hyperthermophilic archaea of the Pyrococcus genus: analysis of adaptation to different environmental conditions (Q33521360)

27 July 2017

title

Molecular evolution of the hyperthermophilic archaea of the Pyrococcus genus: analysis of adaptation to different environmental conditions (English)

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27 July 2017

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Nikolay A Kolchanov

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27 July 2017

Konstantin V Gunbin

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Dmitry A Afonnikov

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language of work or name

English

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publication date

30 December 2009

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27 July 2017

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27 July 2017

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27 July 2017

page(s)

639

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Diversity of anaerobic heterotrophic thermophiles isolated from deep-sea hydrothermal vents of the Mid-Atlantic Ridge

27 July 2017

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28 July 2018

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28 July 2018

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28 July 2018

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Pressure-jump-induced kinetics reveals a hydration dependent folding/unfolding mechanism of ribonuclease A

28 July 2018

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28 July 2018

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28 July 2018

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Metabolic and evolutionary relationships among Pyrococcus Species: genetic exchange within a hydrothermal vent environment.

28 July 2018

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A comparison of proteins from Pyrococcus furiosus and Pyrococcus abyssi: barophily in the physicochemical properties of amino acids and in the genetic code

28 July 2018

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Molecular diversity of new Thermococcales isolates from a single area of hydrothermal deep-sea vents as revealed by randomly amplified polymorphic DNA fingerprinting and 16S rRNA gene sequence analysis

28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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Pressure-induced unfolding of the molten globule of all-Ala alpha-lactalbumin

28 July 2018

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Merging genomes with geochemistry in hydrothermal ecosystems

28 July 2018

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High pressure effects on biological macromolecules: from structural changes to alteration of cellular processes

28 July 2018

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Cellobiose uptake in the hyperthermophilic archaeon Pyrococcus furiosus is mediated by an inducible, high-affinity ABC transporter

28 July 2018

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A novel microbial habitat in the mid-ocean ridge subseafloor

28 July 2018

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Genomic sequence of hyperthermophile, Pyrococcus furiosus: implications for physiology and enzymology

28 July 2018

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28 July 2018

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28 July 2018

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Adaptations of the archaeal cell membrane to heat stress

28 July 2018

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28 July 2018

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Thermococcus barophilus sp. nov., a new barophilic and hyperthermophilic archaeon isolated under high hydrostatic pressure from a deep-sea hydrothermal vent.

28 July 2018

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Complete Sequence and Gene Organization of the Genome of a Hyper-thermophilic Archaebacterium, Pyrococcus horikoshii OT3

28 July 2018

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Pyrococcus horikoshii sp. nov., a hyperthermophilic archaeon isolated from a hydrothermal vent at the Okinawa Trough.

28 July 2018

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Positive Darwinian selection after gene duplication in primate ribonuclease genes

28 July 2018

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A Genomic Perspective on Protein Families

28 July 2018

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Reclassification of the Crenarchaeal Orders and Families in Accordance with 16S rRNA Sequence Data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816203

A test of the "jigsaw puzzle" model for protein folding by multiple methionine substitutions within the core of T4 lysozyme

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816203

Active barnase variants with completely random hydrophobic cores

28 July 2018

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How different amino acid sequences determine similar protein structures: the structure and evolutionary dynamics of the globins

28 July 2018

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A simple method for displaying the hydropathic character of a protein

28 July 2018

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Amino acid difference formula to help explain protein evolution

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816203

Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

28 July 2018

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Structure, biosynthesis, and physicochemical properties of archaebacterial lipids

28 July 2018

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28 July 2018

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A simplified representation of protein conformations for rapid simulation of protein folding

28 July 2018

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A molecular and physiological survey of a diverse collection of hydrothermal vent Thermococcus and Pyrococcus isolates

28 July 2018

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Pyrococcus CH1, an obligate piezophilic hyperthermophile: extending the upper pressure-temperature limits for life.

31 October 2018

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Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution.

31 October 2018

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Amino acid and codon usage profiles: adaptive changes in the frequency of amino acids and codons.

31 October 2018

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The nonsynonymous/synonymous substitution rate ratio versus the radical/conservative replacement rate ratio in the evolution of mammalian genes

31 October 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816203

Minimal Amino Acid Requirements of the Hyperthermophilic Archaeon Pyrococcus abyssi, Isolated from Deep-Sea Hydrothermal Vents.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816203

Modulation of prion protein structure by pressure and temperature.

31 October 2018

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A proposal to rename the hyperthermophile Pyrococcus woesei as Pyrococcus furiosus subsp. woesei

31 October 2018

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Continuous enrichment culture and molecular monitoring to investigate the microbial diversity of thermophiles inhabiting deep-sea hydrothermal ecosystems

31 October 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816203

Gene regulatory network growth by duplication

31 October 2018

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Are radical and conservative substitution rates useful statistics in molecular evolution?

31 October 2018

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MRBAYES: Bayesian inference of phylogenetic trees

31 October 2018

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Genome evolution at the genus level: comparison of three complete genomes of hyperthermophilic archaea

31 October 2018

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Physiology and continuous culture of the hyperthermophilic deep-sea vent archaeon Pyrococcus abyssi ST549

31 October 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816203

Pyrococcus glycovorans sp. nov., a hyperthermophilic archaeon isolated from the East Pacific Rise.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816203

Divergence of the hyperthermophilic archaea Pyrococcus furiosus and P. horikoshii inferred from complete genomic sequences

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816203

The characterization of amino acid sequences in proteins by statistical methods

31 October 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816203

The ocean abysses witnessed the origin of the genetic code

31 October 2018

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The effects of hydrostatic pressure on ribosome conformation in Escherichia coli: and in vivo study using differential scanning calorimetry

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Amino acid side chain parameters for correlation studies in biology and pharmacology

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Accuracies of ancestral amino acid sequences inferred by the parsimony, likelihood, and distance methods

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Comparison of microbial communities associated with phase-separation-induced hydrothermal fluids at the Yonaguni Knoll IV hydrothermal field, the Southern Okinawa Trough

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Rates of conservative and radical nonsynonymous nucleotide substitutions in mammalian nuclear genes

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Transcriptional response reveals translation machinery as target for high pressure in Lactobacillus sanfranciscensis

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How far can sequences diverge?

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Use of hydrostatic pressure to produce 'native' monomers of yeast enolase

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Identifiers

DOI

10.1186/1471-2164-10-639

1 reference

Dimensions Publication ID

27 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-10-639

9 September 2019

1 reference

27 July 2017

1 reference