Multiple aspects of ATP-dependent nucleosome translocation by RSC and Mi-2 are directed by the underlying DNA sequence (Q33485849)

27 July 2017

title

Multiple aspects of ATP-dependent nucleosome translocation by RSC and Mi-2 are directed by the underlying DNA sequence (English)

1 reference

27 July 2017

Colin Logie

0 references

Joke J F A van Vugt

1 reference

27 July 2017

Martijn de Jager

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27 July 2017

Magdalena Murawska

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27 July 2017

Alexander Brehm

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27 July 2017

John van Noort

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27 July 2017

language of work or name

English

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publication date

23 July 2009

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27 July 2017

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27 July 2017

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27 July 2017

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27 July 2017

page(s)

e6345

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Creative Commons Attribution 4.0 International

27 July 2017

start time

23 July 2009

1 reference

April 2022 Public Data File from Crossref

copyrighted

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cites work

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ES cell pluripotency and germ-layer formation require the SWI/SNF chromatin remodeling component BAF250a

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Kinetic model for the ATP-dependent translocation of Saccharomyces cerevisiae RSC along double-stranded DNA.

21 June 2018

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DNA sequence- and conformation-directed positioning of nucleosomes by chromatin-remodeling complexes

21 June 2018

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Human SWI/SNF drives sequence-directed repositioning of nucleosomes on C-myc promoter DNA minicircles

21 June 2018

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Structural ramification for acetyl-lysine recognition by the bromodomain of human BRG1 protein, a central ATPase of the SWI/SNF remodeling complex

21 June 2018

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Reverse genetic analysis of the yeast RSC chromatin remodeler reveals a role for RSC3 and SNF5 homolog 1 in ploidy maintenance

21 June 2018

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ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage

21 June 2018

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The ins and outs of ATP-dependent chromatin remodeling in budding yeast: biophysical and proteomic perspectives.

21 June 2018

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The Chd family of chromatin remodelers

21 June 2018

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ATP-dependent chromatin remodeling factors and DNA damage repair

21 June 2018

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DNA translocation and loop formation mechanism of chromatin remodeling by SWI/SNF and RSC.

21 June 2018

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The EcoRI-DNA complex as a model for investigating protein-DNA interactions by atomic force microscopy.

21 June 2018

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RSC exploits histone acetylation to abrogate the nucleosomal block to RNA polymerase II elongation

21 June 2018

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A genomic code for nucleosome positioning

21 June 2018

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Chromatin remodeling by ISW2 and SWI/SNF requires DNA translocation inside the nucleosome

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

Chromatin remodeling by nucleosome disassembly in vitro

21 June 2018

1 reference

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Direct observation of DNA distortion by the RSC complex

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

Double chromodomains cooperate to recognize the methylated histone H3 tail

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

Human SWI/SNF generates abundant, structurally altered dinucleosomes on polynucleosomal templates

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

The histone code at DNA breaks: a guide to repair?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

Histone acetylation, chromatin remodelling and nucleotide excision repair: hint from the study on MFA2 in Saccharomyces cerevisiae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

Distinct roles for the RSC and Swi/Snf ATP-dependent chromatin remodelers in DNA double-strand break repair

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

Cancer-associated mutations in chromatin remodeler hSNF5 promote chromosomal instability by compromising the mitotic checkpoint.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

Initiation of translocation by Type I restriction-modification enzymes is associated with a short DNA extrusion

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

Topography of the ISW2-nucleosome complex: insights into nucleosome spacing and chromatin remodeling

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

Measurement of histone-DNA interaction free energy in nucleosomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

The ctf13-30/CTF13 genomic haploinsufficiency modifier screen identifies the yeast chromatin remodeling complex RSC, which is required for the establishment of sister chromatid cohesion

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

Histone H2A/H2B dimer exchange by ATP-dependent chromatin remodeling activities

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

Global analysis of protein expression in yeast

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

Global analysis of protein localization in budding yeast

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

Dynamic Properties of Nucleosomes during Thermal and ATP-Driven Mobilization

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

Some comments on proteins and protein structure.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

SWI/SNF unwraps, slides, and rewraps the nucleosome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

Function and selectivity of bromodomains in anchoring chromatin-modifying complexes to promoter nucleosomes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

Chromatin remodeling by RSC involves ATP-dependent DNA translocation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

The dMi-2 chromodomains are DNA binding modules important for ATP-dependent nucleosome mobilization

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

Fanconi anemia protein, FANCA, associates with BRG1, a component of the human SWI/SNF complex

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

The tandem affinity purification (TAP) method: a general procedure of protein complex purification

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

dMi-2 and ISWI chromatin remodelling factors have distinct nucleosome binding and mobilization properties

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

BRCA1 is associated with a human SWI/SNF-related complex: linking chromatin remodeling to breast cancer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

SWI-SNF-mediated nucleosome remodeling: role of histone octamer mobility in the persistence of the remodeled state

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

Two functionally distinct forms of the RSC nucleosome-remodeling complex, containing essential AT hook, BAH, and bromodomains

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

Optimization of adhesion mode atomic force microscopy resolves individual molecules in topography and adhesion

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

Recruitment of the SWI/SNF chromatin remodeling complex by transcriptional activators

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

Analysis of the NuRD subunits reveals a histone deacetylase core complex and a connection with DNA methylation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

The E7 oncoprotein associates with Mi2 and histone deacetylase activity to promote cell growth

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

NURD, a novel complex with both ATP-dependent chromatin-remodeling and histone deacetylase activities

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

Catalytic activity of the yeast SWI/SNF complex on reconstituted nucleosome arrays.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

Crystal structure of the nucleosome core particle at 2.8 Å resolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

RSC, an essential, abundant chromatin-remodeling complex

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

Stimulation of GAL4 derivative binding to nucleosomal DNA by the yeast SWI/SNF complex

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

Determination of heat-shock transcription factor 2 stoichiometry at looped DNA complexes using scanning force microscopy.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

Structural features of a phased nucleosome core particle

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

Characterization of the yeast SWI1, SWI2, and SWI3 genes, which encode a global activator of transcription

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

Nucleosomes can invade DNA territories occupied by their neighbors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

Recruitment of a chromatin remodelling complex by the Hog1 MAP kinase to stress genes.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

High-resolution dynamic mapping of histone-DNA interactions in a nucleosome

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

Identification of SUMO-dependent chromatin-associated transcriptional repression components by a genome-wide RNAi screen.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

RSC mobilizes nucleosomes to improve accessibility of repair machinery to the damaged chromatin

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

Probing SWI/SNF remodeling of the nucleosome by unzipping single DNA molecules.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

Chromatin remodeling through directional DNA translocation from an internal nucleosomal site

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

Spatial contacts and nucleosome step movements induced by the NURF chromatin remodeling complex

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

Functional Delineation of Three Groups of the ATP-dependent Family of Chromatin Remodeling Enzymes

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710519

The Swi2/Snf2 bromodomain is important for the full binding and remodeling activity of the SWI/SNF complex on H3- and H4-acetylated nucleosomes

10 December 2018

1 reference

12 December 2020

AFM imaging of protein movements: histone H2A-H2B release during nucleosome remodeling

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12 December 2020

Nucleosomal Arrays Can Be Salt-Reconstituted on a Single-Copy MMTV Promoter DNA Template: Their Properties Differ in Several Ways from Those of Comparable 5S Concatameric Arrays

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12 December 2020

DNA-binding properties of the yeast SWI/SNF complex

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12 December 2020

New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning

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12 December 2020

The Core Histone N-Terminal Domains Are Required for Multiple Rounds of Catalytic Chromatin Remodeling by the SWI/SNF and RSC Complexes†

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12 December 2020

Nucleosome positioning determinants

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0006345

Identifiers

DOI

1 reference

27 July 2017

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1 reference

27 July 2017

1 reference