Transmembrane protein topology prediction using support vector machines (Q33452897)

26 July 2017

title

Transmembrane protein topology prediction using support vector machines (English)

1 reference

26 July 2017

main subject

transmembrane protein

0 references

support vector machine

1 reference

David T Jones

1 reference

26 July 2017

Timothy Nugent

1 reference

26 July 2017

publication date

26 May 2009

1 reference

26 July 2017

1 reference

26 July 2017

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26 July 2017

page(s)

159

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Creative Commons Attribution 2.0 Generic

26 July 2017

start time

26 May 2009

1 reference

April 2022 Public Data File from Crossref

copyrighted

1 reference

April 2022 Public Data File from Crossref

describes a project that uses

support vector machine

1 reference

based on heuristic

inferred from title

cites work

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21 June 2018

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Transmembrane protein domains rarely use covalent domain recombination as an evolutionary mechanism

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Two motifs target Batten disease protein CLN3 to lysosomes in transfected nonneuronal and neuronal cells

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Improved detection of homologous membrane proteins by inclusion of information from topology predictions.

21 June 2018

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21 June 2018

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PRED-CLASS: cascading neural networks for generalized protein classification and genome-wide applications

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Topology prediction for helical transmembrane proteins at 86% accuracy

21 June 2018

1 reference

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A model recognition approach to the prediction of all-helical membrane protein structure and topology

21 June 2018

1 reference

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Patterns of amino acids near signal-sequence cleavage sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700806

A putative signal peptidase recognition site and sequence in eukaryotic and prokaryotic signal peptides

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700806

Membrane protein structure prediction. Hydrophobicity analysis and the positive-inside rule

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700806

Comparison of the predicted and observed secondary structure of T4 phage lysozyme

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700806

A combinatorial pattern discovery approach for the prediction of membrane dipping (re-entrant) loops.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700806

Structural classification and prediction of reentrant regions in alpha-helical transmembrane proteins: application to complete genomes.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700806

An HMM posterior decoder for sequence feature prediction that includes homology information

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700806

Transmembrane helix prediction: a comparative evaluation and analysis.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700806

Best alpha-helical transmembrane protein topology predictions are achieved using hidden Markov models and evolutionary information

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700806

Reliability measures for membrane protein topology prediction algorithms.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700806

A collection of well characterised integral membrane proteins.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700806

Comparative genomics of the human and Fugu voltage-gated calcium channel α1-subunit gene family reveals greater diversity in Fugu

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700806

Enhanced membrane protein topology prediction using a hierarchical classification method and a new scoring function.

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19470175

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Topological rules for membrane protein assembly in eukaryotic cells

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19470175

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-10-159

1 reference

26 July 2017

DBLP publication ID

journals/bmcbi/NugentJ09

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

26 July 2017

1 reference