Comprehensive genotyping of the USA national maize inbred seed bank. (Q33455742)

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3 March 2020

title

Comprehensive genotyping of the USA national maize inbred seed bank (English)

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3 March 2020

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3 March 2020

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3 March 2020

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3 March 2020

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3 March 2020

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3 March 2020

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3 March 2020

Mark J Millard

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3 March 2020

Jeffrey C Glaubitz

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3 March 2020

Jason A Peiffer

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3 March 2020

Charlotte B Acharya

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3 March 2020

Sharon E Mitchell

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3 March 2020

Michael D McMullen

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3 March 2020

Candice A Gardner

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3 March 2020

language of work or name

English

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publication date

11 June 2013

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3 March 2020

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volume

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issue

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3 March 2020

page(s)

R55

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Lessons from Dwarf8 on the strengths and weaknesses of structured association mapping

3 March 2020

cites work

1 reference

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Switchgrass genomic diversity, ploidy, and evolution: novel insights from a network-based SNP discovery protocol

21 June 2018

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Historical genomics of North American maize.

21 June 2018

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ZmCCT and the genetic basis of day-length adaptation underlying the postdomestication spread of maize

21 June 2018

1 reference

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Comparative population genomics of maize domestication and improvement

21 June 2018

1 reference

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Maize HapMap2 identifies extant variation from a genome in flux.

21 June 2018

1 reference

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Flowering time in maize: linkage and epistasis at a major effect locus.

21 June 2018

1 reference

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Rare and common variants: twenty arguments

21 June 2018

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Crop genomics: advances and applications

21 June 2018

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A large maize (Zea mays L.) SNP genotyping array: development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome

21 June 2018

1 reference

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Distribution of allele frequencies and effect sizes and their interrelationships for common genetic susceptibility variants

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707059

Comparative SNP and haplotype analysis reveals a higher genetic diversity and rapider LD decay in tropical than temperate germplasm in maize

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707059

Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707059

A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707059

The FT-like ZCN8 Gene Functions as a Floral Activator and Is Involved in Photoperiod Sensitivity in Maize.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707059

Effect of population structure corrections on the results of association mapping tests in complex maize diversity panels

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707059

Genome-wide patterns of genetic variation among elite maize inbred lines

21 June 2018

1 reference

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Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707059

Rare genetic variation at Zea mays crtRB1 increases beta-carotene in maize grain

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707059

Mixed linear model approach adapted for genome-wide association studies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707059

Population structure and genetic diversity in a commercial maize breeding program assessed with SSR and SNP markers

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707059

Genetic characterization and linkage disequilibrium estimation of a global maize collection using SNP markers

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707059

A first-generation haplotype map of maize

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707059

The B73 Maize Genome: Complexity, Diversity, and Dynamics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707059

Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707059

Genetic properties of the maize nested association mapping population

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707059

The genetic architecture of maize flowering time.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707059

PLINK: a tool set for whole-genome association and population-based linkage analyses

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707059

Conserved noncoding genomic sequences associated with a flowering-time quantitative trait locus in maize

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707059

TASSEL: software for association mapping of complex traits in diverse samples

21 June 2018

1 reference

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delayed flowering1 Encodes a basic leucine zipper protein that mediates floral inductive signals at the shoot apex in maize

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707059

Maize association population: a high-resolution platform for quantitative trait locus dissection

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707059

Ascertainment bias in studies of human genome-wide polymorphism.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707059

Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707059

Structure and expression of maize phytochrome family homeologs.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707059

Genetic structure and diversity among maize inbred lines as inferred from DNA microsatellites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707059

Genetic diversity and selection in the maize starch pathway

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707059

Intraspecific violation of genetic colinearity and its implications in maize

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707059

Molecular analysis of FRIGIDA, a major determinant of natural variation in Arabidopsis flowering time.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707059

GAPIT: genome association and prediction integrated tool

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707059

Efficient methods to compute genomic predictions

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707059

Selection versus demography: a multilocus investigation of the domestication process in maize

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707059

Dwarf8 polymorphisms associate with variation in flowering time

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707059

Characterization of the maize gene sugary1, a determinant of starch composition in kernels

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707059

Genome-wide association study of leaf architecture in the maize nested association mapping population

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707059

Cloning of the y1 Locus of Maize, a Gene Involved in the Biosynthesis of Carotenoids

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23759205

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Extent and genome-wide distribution of linkage disequilibrium in commercial maize germplasm

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23759205

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

ESTIMATING F-STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE.

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23759205

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/GB-2013-14-6-R55

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23759205%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

1 reference

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3 March 2020

PubMed publication ID

23759205

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23759205%20AND%20SRC:MED&resulttype=core&format=json