Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data (Q33418947)

26 July 2017

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title

Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data (English)

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26 July 2017

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Joshua N Adkins

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Richard D Smith

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Navdeep Jaitly

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26 July 2017

Anoop Mayampurath

series ordinal

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26 July 2017

Kyle Littlefield

series ordinal

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26 July 2017

Gordon A Anderson

series ordinal

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26 July 2017

publication date

17 March 2009

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26 July 2017

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26 July 2017

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26 July 2017

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An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

26 July 2017

cites work

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OpenMS - an open-source software framework for mass spectrometry

21 June 2018

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DeconMSn: a software tool for accurate parent ion monoisotopic mass determination for tandem mass spectra

21 June 2018

1 reference

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Accurate mass measurements in proteomics.

21 June 2018

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High-speed data reduction, feature detection, and MS/MS spectrum quality assessment of shotgun proteomics data sets using high-resolution mass spectrometry

21 June 2018

1 reference

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VIPER: an advanced software package to support high-throughput LC-MS peptide identification

21 June 2018

1 reference

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Improved method for differential expression proteomics using trypsin-catalyzed 18O labeling with a correction for labeling efficiency.

21 June 2018

1 reference

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PEPPeR, a platform for experimental proteomic pattern recognition.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666663

MapQuant: open-source software for large-scale protein quantification

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666663

XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666663

A tool to visualize and evaluate data obtained by liquid chromatography-electrospray ionization-mass spectrometry

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666663

ESI-FTICR mass spectrometry employing data-dependent external ion selection and accumulation.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666663

A high-performance modular data system for Fourier transform ion cyclotron resonance mass spectrometry

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666663

Electrospray ionization mass spectrometry: Deconvolution by an Entropy-Based algorithm

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666663

Automated assignment of charge states from resolved isotopic peaks for multiply charged ions.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666663

A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666663

Automatic deconvolution of isotope-resolved mass spectra using variable selection and quantized peptide mass distribution.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666663

Algorithms for automatic interpretation of high resolution mass spectra.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666663

Automated reduction and interpretation of high resolution electrospray mass spectra of large molecules.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666663

A universal algorithm for fast and automated charge state deconvolution of electrospray mass-to-charge ratio spectra.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666663

Capillary LC Coupled with High-Mass Measurement Accuracy Mass Spectrometry for Metabolic Profiling

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666663

Determination of monoisotopic masses and ion populations for large biomolecules from resolved isotopic distributions

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19292916

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

An accurate mass tag strategy for quantitative and high-throughput proteome measurements

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19292916

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Rapid Calculation of Isotope Distributions

1 reference

27 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1186/1471-2105-10-87

Identifiers

DOI

10.1186/1471-2105-10-87

1 reference

journals/bmcbi/JaitlyMLAAS09

26 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

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26 July 2017

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