NITPICK: peak identification for mass spectrometry data (Q33364583)

26 July 2017

title

NITPICK: peak identification for mass spectrometry data (English)

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26 July 2017

Bernhard Y Renard

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Marc Kirchner

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26 July 2017

Hanno Steen

series ordinal

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26 July 2017

Judith A J Steen

series ordinal

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26 July 2017

Fred A Hamprecht

series ordinal

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26 July 2017

publication date

28 August 2008

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26 July 2017

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26 July 2017

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26 July 2017

page(s)

355

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Interpreting the protein language using proteomics.

26 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655099

Detecting and aligning peaks in mass spectrometry data with applications to MALDI.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655099

An automated method for the analysis of stable isotope labeling data in proteomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655099

Statistical and computational methods for comparative proteomic profiling using liquid chromatography-tandem mass spectrometry

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655099

Automated interpretation of mass spectra of complex mixtures by matching of isotope peak distributions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655099

Modular, scriptable and automated analysis tools for high-throughput peptide mass fingerprinting

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655099

Sample classification from protein mass spectrometry, by 'peak probability contrasts'.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655099

An operator-independent approach to mass spectral peak identification and integration

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655099

Protein profiling in brain tumors using mass spectrometry: feasibility of a new technique for the analysis of protein expression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655099

Microorganism identification by matrix-assisted laser/desorption ionization mass spectrometry and model-derived ribosomal protein biomarkers

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655099

Automatic poisson peak harvesting for high throughput protein identification

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655099

Improving protein identification from peptide mass fingerprinting through a parameterized multi-level scoring algorithm and an optimized peak detection

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655099

The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655099

The rapid identification of intact microorganisms using mass spectrometry

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655099

Automated assignment of charge states from resolved isotopic peaks for multiply charged ions.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655099

Ultrahigh-speed calculation of isotope distributions.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655099

A method for automatically interpreting mass spectra of 18O-labeled isotopic clusters.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655099

Automated intensity descent algorithm for interpretation of complex high-resolution mass spectra.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655099

Determination of peptide and protein ion charge states by Fourier transformation of isotope-resolved mass spectra.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655099

Automatic deconvolution of isotope-resolved mass spectra using variable selection and quantized peptide mass distribution.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655099

Algorithms for automatic interpretation of high resolution mass spectra.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655099

Efficient calculation of accurate masses of isotopic peaks.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655099

Use of statistical methods for estimation of total number of charges in a mass spectrometry experiment

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655099

Quantification of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655099

Band composition analysis: a new procedure for deconvolution of the mass spectra of organometallic compounds.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655099

Automated deconvolution and deisotoping of electrospray mass spectra.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655099

Automated reduction and interpretation of high resolution electrospray mass spectra of large molecules.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655099

A universal algorithm for fast and automated charge state deconvolution of electrospray mass-to-charge ratio spectra.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655099

Dissociation of individual isotopic peaks: predicting isotopic distributions of product ions in MSn

31 October 2018

1 reference

12 December 2020

Determination of monoisotopic masses and ion populations for large biomolecules from resolved isotopic distributions

1 reference

12 December 2020

Reduction of chemical formulas from the isotopic peak distributions of high-resolution mass spectra

1 reference

12 December 2020

Proteomics from the clinical perspective: many hopes and much debate

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2105-9-355

1 reference

journals/bmcbi/RenardKSSH08

26 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

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26 July 2017

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