Transmembrane helix prediction using amino acid property features and latent semantic analysis (Q33322215)

25 July 2017

title

Transmembrane helix prediction using amino acid property features and latent semantic analysis (English)

1 reference

25 July 2017

main subject

transmembrane protein

0 references

author

Judith Klein-Seetharaman

series ordinal

object named as

Judith Klein-Seetharaman

0 references

Madhavi Ganapathiraju

object named as

Madhavi Ganapathiraju

0 references

N Balakrishnan

1 reference

25 July 2017

Raj Reddy

series ordinal

1 reference

25 July 2017

language of work or name

1 reference

1 January 2008

1 reference

25 July 2017

1 reference

25 July 2017

volume

9 Suppl 1

1 reference

25 July 2017

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Creative Commons Attribution 2.0 Generic

25 July 2017

start time

1 February 2008

1 reference

April 2022 Public Data File from Crossref

copyrighted

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cites work

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1 reference

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Transmembrane protein structures without X-rays.

14 July 2018

1 reference

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The C-terminal tail of the gp41 transmembrane envelope glycoprotein of HIV-1 clades A, B, C, and D may exist in two conformations: an analysis of sequence, structure, and function

14 July 2018

1 reference

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14 July 2018

1 reference

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Computational analysis of alpha-helical membrane protein structure: implications for the prediction of 3D structural models.

14 July 2018

1 reference

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Static benchmarking of membrane helix predictions

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2259405

Transmembrane helix predictions revisited

14 July 2018

1 reference

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Long membrane helices and short loops predicted less accurately

14 July 2018

1 reference

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Integral membrane protein biosynthesis: why topology is hard to predict.

14 July 2018

1 reference

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14 July 2018

1 reference

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Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

14 July 2018

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Structural determinants of water permeation through aquaporin-1

14 July 2018

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kPROT: a knowledge-based scale for the propensity of residue orientation in transmembrane segments. Application to membrane protein structure prediction.

14 July 2018

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A hidden Markov model for predicting transmembrane helices in protein sequences

14 July 2018

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Principles governing amino acid composition of integral membrane proteins: application to topology prediction

14 July 2018

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14 July 2018

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14 July 2018

1 reference

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Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms

14 July 2018

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The Structure of the Potassium Channel: Molecular Basis of K+ Conduction and Selectivity

14 July 2018

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Prediction of transmembrane alpha-helices in prokaryotic membrane proteins: the dense alignment surface method

14 July 2018

1 reference

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Topology prediction for helical transmembrane proteins at 86% accuracy

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2259405

Global statistics of protein sequences: implications for the origin, evolution, and prediction of structure

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2259405

Transmembrane helices predicted at 95% accuracy

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2259405

A simple method for displaying the hydropathic character of a protein

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2259405

Enhanced recognition of protein transmembrane domains with prediction-based structural profiles

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2259405

Transmembrane helix prediction: a comparative evaluation and analysis.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2259405

Best alpha-helical transmembrane protein topology predictions are achieved using hidden Markov models and evolutionary information

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2259405

TM or not TM: transmembrane protein prediction with low false positive rate using DAS-TMfilter.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2259405

Identification of transmembrane protein functions by binary topology patterns

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2259405

Reliability measures for membrane protein topology prediction algorithms.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2259405

Energetics, stability, and prediction of transmembrane helices

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2259405

Isolated transmembrane helices arranged across a membrane: computational studies.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2259405

Prediction of membrane proteins based on classification of transmembrane segments

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18315857

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Transmembrane topology prediction methods: a re-assessment and improvement by a consensus method using a dataset of experimentally-characterized transmembrane topologies

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18315857

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-9-S1-S4

1 reference

journals/bmcbi/GanapathirajuBRK08

25 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

25 July 2017

1 reference