Analysis of sequence conservation at nucleotide resolution (Q33312848)

25 July 2017

title

Analysis of sequence conservation at nucleotide resolution (English)

1 reference

25 July 2017

1 reference

25 July 2017

John Stamatoyannopoulos

series ordinal

object named as

John Stamatoyannopoulos

1 reference

25 July 2017

Saurabh Asthana

1 reference

25 July 2017

Shamil Sunyaev

series ordinal

1 reference

25 July 2017

publication date

14 November 2007

1 reference

PLOS Computational Biology

25 July 2017

published in

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25 July 2017

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25 July 2017

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25 July 2017

page(s)

e254

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Creative Commons Attribution 4.0 International

25 July 2017

start time

28 December 2007

1 reference

April 2022 Public Data File from Crossref

copyrighted

0 references

cites work

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Selection in favor of nucleotides G and C diversifies evolution rates and levels of polymorphism at mammalian synonymous sites

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Bayesian Markov chain Monte Carlo sequence analysis reveals varying neutral substitution patterns in mammalian evolution

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Identification and characterization of multi-species conserved sequences

21 June 2018

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Neutral Substitutions Occur at a Faster Rate in Exons Than in Noncoding DNA in Primate Genomes

21 June 2018

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Phylogenetic shadowing of primate sequences to find functional regions of the human genome

21 June 2018

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The Ka/Ks ratio: diagnosing the form of sequence evolution

21 June 2018

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21 June 2018

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Predicting functional divergence in protein evolution by site-specific rate shifts

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21 June 2018

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Evolution of domain families

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2230682

Codon-substitution models for heterogeneous selection pressure at amino acid sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2230682

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21 June 2018

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Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

21 June 2018

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Mutation rates differ among regions of the mammalian genome

21 June 2018

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Evolutionary constraints in conserved nongenic sequences of mammals.

21 June 2018

1 reference

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31 October 2018

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Detecting amino acid sites under positive selection and purifying selection

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2230682

Phylogenetic estimation of context-dependent substitution rates by maximum likelihood

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2230682

Distinct changes of genomic biases in nucleotide substitution at the time of Mammalian radiation.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2230682

Tracing the evolutionary history of Drosophila regulatory regions with models that identify transcription factor binding sites

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2230682

Conserved noncoding sequences are selectively constrained and not mutation cold spots

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2230682

A limited role for balancing selection

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18166073

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A universal trend of amino acid gain and loss in protein evolution

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18166073

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.0030254

1 reference

journals/ploscb/AsthanaRSS07

25 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

25 July 2017

1 reference