Exonization of active mouse L1s: a driver of transcriptome evolution? (Q33304042)

25 July 2017

title

Exonization of active mouse L1s: a driver of transcriptome evolution? (English)

1 reference

25 July 2017

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1 reference

25 July 2017

Tomasz Zemojtel

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Tobias Penzkofer

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Richard Badge

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Martin Vingron

1 reference

25 July 2017

Jörg Schultz

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25 July 2017

language of work or name

English

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publication date

26 October 2007

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25 July 2017

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25 July 2017

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25 July 2017

page(s)

392

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Functional persistence of exonized mammalian-wide interspersed repeat elements (MIRs)

25 July 2017

cites work

1 reference

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Comparative analysis of transposed element insertion within human and mouse genomes reveals Alu's unique role in shaping the human transcriptome.

21 June 2018

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21 June 2018

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L1 antisense promoter drives tissue-specific transcription of human genes

21 June 2018

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21 June 2018

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Effects of L1 retrotransposon insertion on transcript processing, localization and accumulation: lessons from the retinal degeneration 7 mouse and implications for the genomic ecology of L1 elements

21 June 2018

1 reference

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Transcript annotation in FANTOM3: mouse gene catalog based on physical cDNAs

21 June 2018

1 reference

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LINE-1 RNA splicing and influences on mammalian gene expression

21 June 2018

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21 June 2018

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Ubiquitin-binding domains in Y-family polymerases regulate translesion synthesis

21 June 2018

1 reference

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LINE-1 retrotransposons: modulators of quantity and quality of mammalian gene expression?

21 June 2018

1 reference

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Alu-SINE exonization: en route to protein-coding function

21 June 2018

1 reference

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L1Base: from functional annotation to prediction of active LINE-1 elements

21 June 2018

1 reference

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Variation in sequence and organization of splicing regulatory elements in vertebrate genes

21 June 2018

1 reference

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Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes

21 June 2018

1 reference

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RNA truncation by premature polyadenylation attenuates human mobile element activity

21 June 2018

1 reference

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Hot L1s account for the bulk of retrotransposition in the human population

21 June 2018

1 reference

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Can an arbitrary sequence evolve towards acquiring a biological function?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2176070

Murine GBP-5, a new member of the murine guanylate-binding protein family, is coordinately regulated with other GBPs in vivo and in vitro

21 June 2018

1 reference

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BLAT—The BLAST-Like Alignment Tool

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2176070

A novel active L1 retrotransposon subfamily in the mouse

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2176070

Antisense promoter of human L1 retrotransposon drives transcription of adjacent cellular genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2176070

Initial sequencing and analysis of the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2176070

Evolutionary analyses of the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2176070

Human L1 retrotransposition: cis preference versus trans complementation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2176070

EMBOSS: the European Molecular Biology Open Software Suite

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2176070

RNAs from all categories generate retrosequences that may be exapted as novel genes or regulatory elements

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2176070

Analysis of the promoter from an expanding mouse retrotransposon subfamily

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2176070

Rapid amplification of a retrotransposon subfamily is evolving the mouse genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2176070

Insertion of a 5' truncated L1 element into the 3' end of exon 44 of the dystrophin gene resulted in skipping of the exon during splicing in a case of Duchenne muscular dystrophy

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2176070

L1 A-monomer tandem arrays have expanded during the course of mouse L1 evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2176070

Organization and expression of eucaryotic split genes coding for proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2176070

Gene-breaking: a new paradigm for human retrotransposon-mediated gene evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2176070

GBP-5 splicing variants: New guanylate-binding proteins with tumor-associated expression and antigenicity

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2176070

Many human genes are transcribed from the antisense promoter of L1 retrotransposon

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2176070

The bg allele mutation is due to a LINE1 element retrotransposition

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2176070

Multiple alignment using hidden Markov models

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2176070

Transposable elements are found in a large number of human protein-coding genes

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17963496

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-8-392

1 reference

Dimensions Publication ID

25 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-8-392

9 September 2019

1 reference

25 July 2017

1 reference