Identification of regulatory network topological units coordinating the genome-wide transcriptional response to glucose in Escherichia coli (Q33287232)

25 July 2017

title

Identification of regulatory network topological units coordinating the genome-wide transcriptional response to glucose in Escherichia coli (English)

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25 July 2017

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Osbaldo Resendis

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Julio Collado-Vides

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Guillermo Gosset

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25 July 2017

Milton Saier

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25 July 2017

author name string

Rosa María Gutierrez-Ríos

series ordinal

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25 July 2017

Julio A Freyre-Gonzalez

series ordinal

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25 July 2017

publication date

8 June 2007

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25 July 2017

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25 July 2017

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25 July 2017

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RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions

25 July 2017

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Integration of three signals at the Escherichia coli nrf promoter: a role for Fis protein in catabolite repression

21 June 2018

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Topological units of environmental signal processing in the transcriptional regulatory network of Escherichia coli.

21 June 2018

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Functional interactions between the carbon and iron utilization regulators, Crp and Fur, in Escherichia coli

21 June 2018

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21 June 2018

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Identification of the CRP regulon using in vitro and in vivo transcriptional profiling

21 June 2018

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21 June 2018

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Transcriptome analysis of Crp-dependent catabolite control of gene expression in Escherichia coli

21 June 2018

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Analysis of gene expression in Escherichia coli in response to changes of growth-limiting nutrient in chemostat cultures

21 June 2018

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Regulation at complex bacterial promoters: how bacteria use different promoter organizations to produce different regulatory outcomes

21 June 2018

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21 June 2018

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Regulatory network of Escherichia coli: consistency between literature knowledge and microarray profiles.

21 June 2018

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Identifying global regulators in transcriptional regulatory networks in bacteria

21 June 2018

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Selective regulation of ptsG expression by Fis. Formation of either activating or repressing nucleoprotein complex in response to glucose

21 June 2018

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Genome-wide analysis of the stationary-phase sigma factor (sigma-H) regulon of Bacillus subtilis

21 June 2018

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Correlation between Bacillus subtilis scoC phenotype and gene expression determined using microarrays for transcriptome analysis

21 June 2018

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The complete phosphotransferase system in Escherichia coli

21 June 2018

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Development and validation of corynebacterium DNA microarrays.

21 June 2018

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RNA expression analysis using a 30 base pair resolution Escherichia coli genome array

21 June 2018

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Vectorial metabolism and the evolution of transport systems

21 June 2018

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Functional genomics: expression analysis of Escherichia coli growing on minimal and rich media

21 June 2018

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The cyclic AMP receptor protein is dependent on GcvA for regulation of the gcv operon.

21 June 2018

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Cluster analysis and display of genome-wide expression patterns

21 June 2018

1 reference

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Fis, an accessorial factor for transcriptional activation of the mar (multiple antibiotic resistance) promoter of Escherichia coli in the presence of the activator MarA, SoxS, or Rob

21 June 2018

1 reference

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Growth-phase-dependent expression of cspD, encoding a member of the CspA family in Escherichia coli

21 June 2018

1 reference

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rRNA transcription and growth rate-dependent regulation of ribosome synthesis in Escherichia coli

21 June 2018

1 reference

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Differential regulation of multiple overlapping promoters in flagellar class II operons in Escherichia coli.

21 June 2018

1 reference

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Frur mediates catabolite activation of pyruvate kinase (pykF) gene expression in Escherichia coli

21 June 2018

1 reference

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In vitro binding of the pleiotropic transcriptional regulatory protein, FruR, to the fru, pps, ace, pts and icd operons of Escherichia coli and Salmonella typhimurium

21 June 2018

1 reference

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Production of abnormal proteins in E. coli stimulates transcription of lon and other heat shock genes

21 June 2018

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Structural and functional relationships between fumarase and aspartase. Nucleotide sequences of the fumarase (fumC) and aspartase (aspA) genes of Escherichia coli K12.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1905917

Induction of a heat shock-like response by unfolded protein in Escherichia coli: dependence on protein level not protein degradation

21 June 2018

1 reference

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Nucleotide sequence of the FNR-regulated fumarase gene (fumB) of Escherichia coli K-12.

21 June 2018

1 reference

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Role of RpoH, a heat shock regulator protein, in Escherichia coli carbon starvation protein synthesis and survival

21 June 2018

1 reference

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A new mechanism for coactivation of transcription initiation: repositioning of an activator triggered by the binding of a second activator

21 June 2018

1 reference

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Influence of cyclic AMP, agmatine, and a novel protein encoded by a flanking gene on speB (agmatine ureohydrolase) in Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1905917

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1905917

Global transcriptional programs reveal a carbon source foraging strategy by Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1905917

Modular analysis of the transcriptional regulatory network of E. coli.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1905917

Global expression profiling of acetate-grown Escherichia coli

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1905917

An analysis of multifactorial influences on the transcriptional control of ompF and ompC porin expression under nutrient limitation

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1905917

DNA microloops and microdomains: a general mechanism for transcription activation by torsional transmission

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1905917

The pdhR-aceEF-lpd operon of Escherichia coli expresses the pyruvate dehydrogenase complex.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1905917

Transcriptional regulation of the proton translocating NADH dehydrogenase genes (nuoA-N) of Escherichia coli by electron acceptors, electron donors and gene regulators

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1905917

Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1905917

Growth phase-dependent regulation of nuoA-N expression in Escherichia coli K-12 by the Fis protein: upstream binding sites and bioenergetic significance

31 October 2018

1 reference

12 December 2020

CspD, a novel DNA replication inhibitor induced during the stationary phase in Escherichia coli

1 reference

12 December 2020

CRP modulates fis transcription by alternate formation of activating and repressing nucleoprotein complexes

1 reference

12 December 2020

Expression of ptsG, the gene for the major glucose PTS transporter in Escherichia coli, is repressed by Mlc and induced by growth on glucose

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2180-7-53

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Dimensions Publication ID

25 July 2017

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25 July 2017

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