Widespread positive selection in synonymous sites of mammalian genes (Q33285587)

25 July 2017

title

Widespread positive selection in synonymous sites of mammalian genes (English)

1 reference

25 July 2017

author

Svetlana A. Shabalina

object named as

Svetlana A Shabalina

series ordinal

0 references

Leonardo Mariño-Ramírez

object named as

Leonardo Mariño-Ramírez

0 references

Igor B Rogozin

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Eugene V Koonin

1 reference

25 July 2017

Alissa M Resch

1 reference

25 July 2017

Liran Carmel

series ordinal

1 reference

25 July 2017

Aleksey Y Ogurtsov

series ordinal

1 reference

25 July 2017

publication date

23 May 2007

1 reference

Molecular Biology and Evolution

25 July 2017

published in

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25 July 2017

1 reference

25 July 2017

1 reference

25 July 2017

page(s)

1821-1831

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Estimating the neutral rate of nucleotide substitution using introns

25 July 2017

cites work

1 reference

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28 July 2018

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Hearing silence: non-neutral evolution at synonymous sites in mammals

28 July 2018

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28 July 2018

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Selection in favor of nucleotides G and C diversifies evolution rates and levels of polymorphism at mammalian synonymous sites

28 July 2018

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28 July 2018

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Evidence for selection on synonymous mutations affecting stability of mRNA secondary structure in mammals

28 July 2018

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Evidence of functional selection pressure for alternative splicing events that accelerate evolution of protein subsequences

28 July 2018

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28 July 2018

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A scan for positively selected genes in the genomes of humans and chimpanzees

28 July 2018

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28 July 2018

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Variation in sequence and organization of splicing regulatory elements in vertebrate genes

28 July 2018

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Positive selection on the human genome.

28 July 2018

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Genomic regionality in rates of evolution is not explained by clustering of genes of comparable expression profile

28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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Nucleotide Frequency Variation Across Human Genes

28 July 2018

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Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution

28 July 2018

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Neutral Substitutions Occur at a Faster Rate in Exons Than in Noncoding DNA in Primate Genomes

28 July 2018

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Selection on Human Genes as Revealed by Comparisons to Chimpanzee cDNA

28 July 2018

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28 July 2018

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The Ka/Ks ratio: diagnosing the form of sequence evolution

28 July 2018

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28 July 2018

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The effect of tandem substitutions on the correlation between synonymous and nonsynonymous rates in rodents

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28 July 2018

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High genomic deleterious mutation rates in hominids

28 July 2018

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Synonymous and nonsynonymous substitution distances are correlated in mouse and rat genes.

28 July 2018

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28 July 2018

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Synonymous codon bias is related to gene length in Escherichia coli: selection for translational accuracy?

28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

28 July 2018

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28 July 2018

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The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

28 July 2018

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28 July 2018

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The 'effective number of codons' used in a gene

28 July 2018

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Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome

28 July 2018

1 reference

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Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2632937

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2632937

Mammalian mutation pressure, synonymous codon choice, and mRNA degradation

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2632937

OWEN: aligning long collinear regions of genomes

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2632937

Distribution and characterization of regulatory elements in the human genome

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2632937

Rapid evolution of a cyclin A inhibitor gene, roughex, in Drosophila.

31 October 2018

1 reference

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Highly expressed genes in yeast evolve slowly.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2632937

A test of translational selection at 'silent' sites in the human genome: base composition comparisons in alternatively spliced genes.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2632937

Statistical methods for detecting molecular adaptation

31 October 2018

1 reference

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EMBOSS: the European Molecular Biology Open Software Suite

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2632937

Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2632937

Translational selection and molecular evolution

31 October 2018

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12 December 2020

Unifying measures of gene function and evolution

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12 December 2020

Evidence for Purifying Selection Against Synonymous Mutations in Mammalian Exonic Splicing Enhancers

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12 December 2020

Determinants of substitution rates in mammalian genes: expression pattern affects selection intensity but not mutation rate

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12 December 2020

Comparative evolutionary rates of introns and exons in murine rodents

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12 December 2020

Interaction of silent and replacement changes in eukaryotic coding sequences

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12 December 2020

Frequencies of synonymous substitutions in mammals are gene-specific and correlated with frequencies of nonsynonymous substitutions

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12 December 2020

Identifiers

DOI

10.1093/MOLBEV/MSM100

1 reference

25 July 2017

1 reference

25 July 2017

1 reference