Co-evolutionary analysis of domains in interacting proteins reveals insights into domain-domain interactions mediating protein-protein interactions (Q33256165)

From Wikidata

Jump to navigation Jump to search

scientific article

Language	Label	Description	Also known as
English	Co-evolutionary analysis of domains in interacting proteins reveals insights into domain-domain interactions mediating protein-protein interactions	scientific article

Statements

scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

24 July 2017

Co-evolutionary analysis of domains in interacting proteins reveals insights into domain-domain interactions mediating protein-protein interactions (English)

1 reference

Europe PubMed Central

PubMed publication ID

24 July 2017

0 references

protein-protein interaction

1 reference

based on heuristic

inferred from title

Teresa M. Przytycka

object named as

Teresa M Przytycka

4

0 references

author name string

Raja Jothi

1

1 reference

Europe PubMed Central

PubMed publication ID

24 July 2017

Praveen F Cherukuri

2

1 reference

Europe PubMed Central

PubMed publication ID

24 July 2017

Asba Tasneem

3

1 reference

Europe PubMed Central

PubMed publication ID

24 July 2017

publication date

1 August 2006

1 reference

Europe PubMed Central

PubMed publication ID

24 July 2017

Journal of Molecular Biology

1 reference

Europe PubMed Central

PubMed publication ID

24 July 2017

362

1 reference

Europe PubMed Central

PubMed publication ID

24 July 2017

4

1 reference

Europe PubMed Central

PubMed publication ID

24 July 2017

861-875

1 reference

Europe PubMed Central

PubMed publication ID

24 July 2017

Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

Structural systems biology: modelling protein interactions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

Finding biologically relevant protein domain interactions: conserved binding mode analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

Systematic discovery of new recognition peptides mediating protein interaction networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

Inferring protein domain interactions from databases of interacting proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

A protein domain interaction interface database: InterPare

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

Predicting protein-protein interaction by searching evolutionary tree automorphism space

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

Computational verification of protein-protein interactions by orthologous co-expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

Interaction network containing conserved and essential protein complexes in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

Conserved patterns of protein interaction in multiple species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

Evolution and topology in the yeast protein interaction network

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

Coevolution of gene expression among interacting proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

A map of the interactome network of the metazoan C. elegans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

The Database of Interacting Proteins: 2004 update

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

The Pfam protein families database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

Unraveling protein interaction networks with near-optimal efficiency

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

A protein interaction map of Drosophila melanogaster

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic Data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

Discovery of uncharacterized cellular systems by genome-wide analysis of functional linkages

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

Multiple sequence alignment with the Clustal series of programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

Evolution of the protein repertoire

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

A simple dependence between protein evolution rate and the number of protein-protein interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

How reliable are experimental protein-protein interaction data?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

Inferring domain-domain interactions from protein-protein interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

Protein interactions: two methods for assessment of the reliability of high throughput observations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

Comparative assessment of large-scale data sets of protein-protein interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

Functional organization of the yeast proteome by systematic analysis of protein complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

Structure of the Sec23p/24p and Sec13p/31p complexes of COPII

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

Correlated sequence-signatures as markers of protein-protein interaction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

Domain combinations in archaeal, eubacterial and eukaryotic proteomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

A comprehensive two-hybrid analysis to explore the yeast protein interactome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

Co-evolution of proteins with their interaction partners

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

Protein interaction maps for complete genomes based on gene fusion events

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

Detecting protein function and protein-protein interactions from genome sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

Cse1p is required for export of Srp1p/importin-alpha from the nucleus in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

Conservation of gene order: a fingerprint of proteins that physically interact

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

From Src Homology domains to other signaling modules: proposal of the 'protein recognition code'.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

Signaling Through Scaffold, Anchoring, and Adaptor Proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

Correlated mutations contain information about protein-protein interaction 1 1Edited by A. R. Fersht

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

Co-evolution of ligand-receptor pairs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

Structure at 2.8 A resolution of F1-ATPase from bovine heart mitochondria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

Hypothesis. The mechanism of ATP synthase. Conformational change by rotation of the beta-subunit

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

Molecular mechanics of protonmotive F0F1 ATPases. Rolling well and turnstile hypothesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

Basic local alignment search tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

21 June 2018

Locally defined protein phylogenetic profiles reveal previously missed protein interactions and functional relationships

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

31 October 2018

Survey of the geometric association of domain-domain interfaces

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

31 October 2018

Prediction of protein-protein interactions using random decision forest framework

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

31 October 2018

Decomposing protein networks into domain-domain interactions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

31 October 2018

Assessing protein co-evolution in the context of the tree of life assists in the prediction of the interactome.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

31 October 2018

The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

31 October 2018

Statistical analysis of domains in interacting protein pairs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

31 October 2018

Are protein-protein interfaces more conserved in sequence than the rest of the protein surface?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

31 October 2018

Large scale statistical prediction of protein-protein interaction by potentially interacting domain (PID) pair

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

31 October 2018

Integrative approach for computationally inferring protein domain interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

31 October 2018

Co-evolutionary analysis reveals insights into protein-protein interactions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

31 October 2018

In silico two-hybrid system for the selection of physically interacting protein pairs.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

31 October 2018

Is there a bias in proteome research?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

31 October 2018

Similarity of phylogenetic trees as indicator of protein-protein interaction.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

31 October 2018

Protein-protein interaction map inference using interacting domain profile pairs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

31 October 2018

Use of contiguity on the chromosome to predict functional coupling.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618801

31 October 2018

A domain interaction map based on phylogenetic profiling

1 reference

https://pubmed.ncbi.nlm.nih.gov/16949097

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Conservation of Orientation and Sequence in Protein Domain–Domain Interactions

1 reference

https://pubmed.ncbi.nlm.nih.gov/16949097

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Exploiting the co-evolution of interacting proteins to discover interaction specificity

1 reference

https://pubmed.ncbi.nlm.nih.gov/16949097

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolutionary conservation of motif constituents in the yeast protein interaction network

1 reference

https://pubmed.ncbi.nlm.nih.gov/16949097

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Inferring protein interactions from phylogenetic distance matrices

1 reference

https://pubmed.ncbi.nlm.nih.gov/16949097

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The loose coupling mechanism in molecular machines of living cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/16949097

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genetic evidence for interactions between yeast importin alpha (Srp1p) and its nuclear export receptor, Cse1p

1 reference

https://pubmed.ncbi.nlm.nih.gov/16949097

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1016/J.JMB.2006.07.072

1 reference

Europe PubMed Central

PubMed publication ID

24 July 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

24 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

24 July 2017

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q33256165&oldid=1970957352"