anNET: a tool for network-embedded thermodynamic analysis of quantitative metabolome data (Q31152793)

1 September 2017

1 reference

title

anNET: a tool for network-embedded thermodynamic analysis of quantitative metabolome data (English)

1 reference

1 September 2017

Matthias Heinemann

0 references

Nicola Zamboni

1 reference

1 September 2017

Anne Kümmel

1 reference

1 September 2017

16 April 2008

1 reference

1 September 2017

1 reference

1 September 2017

1 reference

1 September 2017

199

1 reference

PMC publication ID

2375130

Creative Commons Attribution 2.0 Generic

1 September 2017

start time

16 April 2008

1 reference

April 2022 Public Data File from Crossref

copyrighted

1 reference

April 2022 Public Data File from Crossref

cites work

A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375130

Genetics. Getting closer to the whole picture.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375130

Multiple high-throughput analyses monitor the response of E. coli to perturbations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375130

A method for estimation of elasticities in metabolic networks using steady state and dynamic metabolomics data and linlog kinetics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375130

Systematic assignment of thermodynamic constraints in metabolic network models

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375130

Metabolic networks in motion: 13C-based flux analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375130

Integrated sampling procedure for metabolome analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375130

Putative regulatory sites unraveled by network-embedded thermodynamic analysis of metabolome data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375130

Centering, scaling, and transformations: improving the biological information content of metabolomics data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375130

In silico genome-scale reconstruction and validation of the Staphylococcus aureus metabolic network.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375130

The next wave in metabolome analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375130

Application of metabolome data in functional genomics: a conceptual strategy

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375130

Challenges for the identification of biological systems from in vivo time series data.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375130

An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375130

From measurements of metabolites to metabolomics: an 'on the fly' perspective illustrated by recent studies of carbon-nitrogen interactions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375130

Metabolic flux responses to pyruvate kinase knockout in Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375130

In vivo dynamics of the pentose phosphate pathway in Saccharomyces cerevisiae.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375130

Estimation of standard Gibbs energy changes of biotransformations

21 June 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375130

21 June 2018

27 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1186/1471-2105-9-199

Fast sampling and quenching procedures for microbial metabolic profiling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375130

Biochemical thermodynamics: applications of Mathematica.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375130

Liquid chromatography-mass spectrometry and 15N metabolic labeling for quantitative metabolic profiling

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375130

Quantitative analysis of the microbial metabolome by isotope dilution mass spectrometry using uniformly 13C-labeled cell extracts as internal standards

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375130

A novel metabolic cycle catalyzes glucose oxidation and anaplerosis in hungry Escherichia coli.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375130

High-throughput classification of yeast mutants for functional genomics using metabolic footprinting.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375130

Metabolic Flux Balancing: Basic Concepts, Scientific and Practical Use

31 October 2018

1 reference

24 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1186/1471-2105-9-199

Identifiers

DOI

10.1186/1471-2105-9-199

1 reference

journals/bmcbi/ZamboniKH08

1 September 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

PMC publication ID

2375130

1 September 2017

PubMed publication ID

18416814

1 reference

PMC publication ID

2375130