Large-Scale Public Transcriptomic Data Mining Reveals a Tight Connection between the Transport of Nitrogen and Other Transport Processes in Arabidopsis (Q31123719)

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English	Large-Scale Public Transcriptomic Data Mining Reveals a Tight Connection between the Transport of Nitrogen and Other Transport Processes in Arabidopsis	scientific article

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scholarly article

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Europe PubMed Central

PMC publication ID

18 August 2017

Large-Scale Public Transcriptomic Data Mining Reveals a Tight Connection between the Transport of Nitrogen and Other Transport Processes in Arabidopsis (English)

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Europe PubMed Central

PMC publication ID

18 August 2017

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object named as

Fei He

1

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Sergei Maslov

3

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author name string

Abhijit A Karve

2

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Europe PubMed Central

PMC publication ID

18 August 2017

Benjamin A Babst

4

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Europe PubMed Central

PMC publication ID

18 August 2017

publication date

11 August 2016

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Europe PubMed Central

PMC publication ID

18 August 2017

Frontiers in Plant Science

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Europe PubMed Central

PMC publication ID

18 August 2017

7

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

1207

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

Large-scale atlas of microarray data reveals the distinct expression landscape of different tissues in Arabidopsis.

1 reference

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Evolutionarily conserved phenylpropanoid pattern on angiosperm pollen

1 reference

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Molecular basis of nitrate uptake by the plant nitrate transporter NRT1.1

1 reference

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Loss of connectivity in cancer co-expression networks.

1 reference

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Towards revealing the functions of all genes in plants

1 reference

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Abundances of microRNAs in human cells can be estimated as a function of the abundances of YRHB and RHHK tetranucleotides in these microRNAs as an ill-posed inverse problem solution

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PLGG1, a plastidic glycolate glycerate transporter, is required for photorespiration and defines a unique class of metabolite transporters

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1 reference

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Reuse of public genome-wide gene expression data

1 reference

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NCBI GEO: archive for functional genomics data sets--update

1 reference

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1 reference

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Uptake, allocation and signaling of nitrate.

1 reference

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Differential network biology

1 reference

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Rewiring of genetic networks in response to DNA damage.

1 reference

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The evolution and future of Earth's nitrogen cycle

1 reference

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Nitrogen uptake, assimilation and remobilization in plants: challenges for sustainable and productive agriculture

1 reference

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Nitrate signaling: adaptation to fluctuating environments.

1 reference

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Arabidopsis gene co-expression network and its functional modules.

1 reference

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Evolution of a novel phenolic pathway for pollen development

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Large-scale analysis of Arabidopsis transcription reveals a basal co-regulation network

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Co-expression tools for plant biology: opportunities for hypothesis generation and caveats

1 reference

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Root uptake regulation: a central process for NPS homeostasis in plants

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A system biology approach highlights a hormonal enhancer effect on regulation of genes in a nitrate responsive "biomodule".

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Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1

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Global transcription profiling reveals differential responses to chronic nitrogen stress and putative nitrogen regulatory components in Arabidopsis

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4981021

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4981021

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4981021

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1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4981021

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1 reference

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1 reference

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1 reference

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1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2016.01207

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1 reference

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1 reference

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1 reference

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1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2016.01207

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1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2016.01207

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1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2016.01207

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1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2016.01207

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1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2016.01207

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1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2016.01207

21 January 2018

Microarray analysis of the nitrate response in Arabidopsis roots and shoots reveals over 1,000 rapidly responding genes and new linkages to glucose, trehalose-6-phosphate, iron, and sulfate metabolism

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2016.01207

21 January 2018

Arabidopsis nitrate transporter NRT1.9 is important in phloem nitrate transport.

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2016.01207

21 January 2018

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1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2016.01207

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4981021

25 November 2018

Regulation of sulfate assimilation by nitrogen in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/27563305

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Inventory of the superfamily of P-type ion pumps in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/27563305

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Arabidopsis nitrate transporter NRT2.5 plays a role in nitrate acquisition and remobilization in nitrogen-starved plants

1 reference

https://pubmed.ncbi.nlm.nih.gov/27563305

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Conservation and coevolution in the scale-free human gene coexpression network

1 reference

https://pubmed.ncbi.nlm.nih.gov/27563305

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Short-term physiological and developmental responses to nitrogen availability in hybrid poplar

1 reference

https://pubmed.ncbi.nlm.nih.gov/27563305

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based on heuristic

inferred from PubMed ID database lookup

A reevaluation of the role of Arabidopsis NRT1.1 in high-affinity nitrate transport

1 reference

https://pubmed.ncbi.nlm.nih.gov/27563305

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.3389/FPLS.2016.01207

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

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