Network-based bioinformatics analysis of spatio-temporal RNA-Seq data reveals transcriptional programs underpinning normal and aberrant retinal development (Q31126223)

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English	Network-based bioinformatics analysis of spatio-temporal RNA-Seq data reveals transcriptional programs underpinning normal and aberrant retinal development	scientific article

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scholarly article

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Europe PubMed Central

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19 August 2017

Network-based bioinformatics analysis of spatio-temporal RNA-Seq data reveals transcriptional programs underpinning normal and aberrant retinal development (English)

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Europe PubMed Central

PMC publication ID

19 August 2017

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author name string

Devi Krishna Priya Karunakaran

1

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Europe PubMed Central

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19 August 2017

Sahar Al Seesi

2

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19 August 2017

Abdul Rouf Banday

3

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19 August 2017

Marybeth Baumgartner

4

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19 August 2017

Anouk Olthof

5

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19 August 2017

Christopher Lemoine

6

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19 August 2017

Ion I Măndoiu

7

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19 August 2017

Rahul N Kanadia

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19 August 2017

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31 August 2016

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19 August 2017

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19 August 2017

17 Suppl 5

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19 August 2017

495

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19 August 2017

Replication-dependent histone genes are actively transcribed in differentiating and aging retinal neurons

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A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium

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Finding the active genes in deep RNA-seq gene expression studies

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Heterochronic misexpression of Ascl1 in the Atoh7 retinal cell lineage blocks cell cycle exit

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GFOLD: a generalized fold change for ranking differentially expressed genes from RNA-seq data

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Towards accurate detection and genotyping of expressed variants from whole transcriptome sequencing data

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Preservation of cone photoreceptors after a rapid yet transient degeneration and remodeling in cone-only Nrl-/- mouse retina

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Next-generation sequencing facilitates quantitative analysis of wild-type and Nrl(-/-) retinal transcriptomes.

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Estimation of alternative splicing isoform frequencies from RNA-Seq data

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The UCSC Genome Browser database: update 2011

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Transcriptional regulation of photoreceptor development and homeostasis in the mammalian retina

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The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function

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Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

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Novel functions of photoreceptor guanylate cyclases revealed by targeted deletion

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Dynamic Pax6 expression during the neurogenic cell cycle influences proliferation and cell fate choices of retinal progenitors

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MENepsilon/beta noncoding RNAs are essential for structural integrity of nuclear paraspeckles

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Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

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Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

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A typology of photoreceptor gene expression patterns in the mouse

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14 July 2018

In vivo function of the orphan nuclear receptor NR2E3 in establishing photoreceptor identity during mammalian retinal development

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5009874

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Metazoan replication-dependent histone mRNAs: a distinct set of RNA polymerase II transcripts

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The retinitis pigmentosa 1 protein is a photoreceptor microtubule-associated protein

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Genomic analysis of mouse retinal development

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Expression profiling of the developing and mature Nrl-/- mouse retina: identification of retinal disease candidates and transcriptional regulatory targets of Nrl

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Nrl is required for rod photoreceptor development

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Multiple phosphorylated isoforms of NRL are expressed in rod photoreceptors

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RGS9, a GTPase accelerator for phototransduction

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A conserved retina-specific gene encodes a basic motif/leucine zipper domain

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Pax-6, a murine paired box gene, is expressed in the developing CNS

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Expression of Fibroblast growth factor 19 (Fgf19) during chicken embryogenesis and eye development, compared with Fgf15 expression in the mouse

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Recruitment of the rod pathway by cones in the absence of rods.

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10.1186/S12864-016-2822-Z

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Europe PubMed Central

PMC publication ID

19 August 2017

Dimensions Publication ID

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9 September 2019

https://scigraph.springernature.com/pub.10.1186/s12864-016-2822-z

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

PubMed publication ID

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Europe PubMed Central

PMC publication ID

19 August 2017

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