FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments (Q31111556)

From Wikidata

Jump to navigation Jump to search

scientific article

Language	Label	Description	Also known as
English	FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments	scientific article

Statements

scholarly article

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments (English)

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Joaquín Dopazo

7

1 reference

Europe PubMed Central

PubMed publication ID

28 June 2017

object named as

Eva Alloza

5

0 references

object named as

Pablo Minguez

2

0 references

object named as

Ignacio Medina

4

0 references

object named as

David Montaner

6

0 references

Fátima Al-Shahrour

1

object named as

Fátima Al-Shahrour

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

author name string

Joaquín Tárraga

3

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

language of work or name

0 references

publication date

3 May 2007

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Nucleic Acids Research

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

35

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Web Server issue

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

W91-6

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Methods for evaluating clustering algorithms for gene expression data using a reference set of functional classes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

Next station in microarray data analysis: GEPAS.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

PIANA: protein interactions and network analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

Genome-wide prediction of mammalian enhancers based on analysis of transcription-factor binding affinity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

cisRED: a database system for genome-scale computational discovery of regulatory elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

Human protein reference database--2006 update

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

The Universal Protein Resource (UniProt): an expanding universe of protein information

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

miRBase: microRNA sequences, targets and gene nomenclature

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

Towards a proteome-scale map of the human protein–protein interaction network

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

A human protein-protein interaction network: a resource for annotating the proteome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

Text-mining and information-retrieval services for molecular biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

Ontological analysis of gene expression data: current tools, limitations, and open problems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

Prediction of protein-protein interactions using distant conservation of sequence patterns and structure relationships

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

Effects of threshold choice on biological conclusions reached during analysis of gene expression by DNA microarrays

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

MicroRNA expression profiles classify human cancers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

Array comparative genomic hybridization and its applications in cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

Discovering molecular functions significantly related to phenotypes by combining gene expression data and biological information

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

InterPro, progress and status in 2005

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

Systems biology in drug discovery

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

Network structures and algorithms in Bioconductor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

MicroRNAs: genomics, biogenesis, mechanism, and function

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

https://api.crossref.org/works/10.1093%2FNAR%2FGKM260

21 January 2018

The Database of Interacting Proteins: 2004 update

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

The KEGG resource for deciphering the genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

MIPS: analysis and annotation of proteins from whole genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

Identifying biological themes within lists of genes with EASE

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

GEPAS: A web-based resource for microarray gene expression data analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

DAVID: Database for Annotation, Visualization, and Integrated Discovery

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

GoMiner: a resource for biological interpretation of genomic and proteomic data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

Global functional profiling of gene expression.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

BIND: the Biomolecular Interaction Network Database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

Gene ontology: tool for the unification of biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

TRANSFAC: an integrated system for gene expression regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

Automatic extraction of keywords from scientific text: application to the knowledge domain of protein families

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

The evolution of molecular biology into systems biology.

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM260

21 January 2018

Profiling Gene Expression Using Onto-Express

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM260

21 January 2018

Functional Interpretation of Microarray Experiments

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM260

21 January 2018

Identifiers

10.1093/NAR/GKM260

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

DBLP publication ID

journals/nar/Al-ShahrourMTMAMD07

1 reference

DBLP Dataset 2021-01-02

28 January 2021

release_se7p6t6ncnel3hxo4ws4yhlknu

1 reference

https://api.fatcat.wiki/v0/release/se7p6t6ncnel3hxo4ws4yhlknu

24 November 2022

based on heuristic

mapped directly with Wikidata item

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q31111556&oldid=1947792075"