Determining Streptococcus suis serotype from short-read whole-genome sequencing data (Q31116950)

18 August 2017

Determining Streptococcus suis serotype from short-read whole-genome sequencing data (English)

1 reference

18 August 2017

whole genome sequencing

1 reference

Streptococcus suis

1 reference

Nahuel Fittipaldi

1 reference

18 August 2017

Sarah Teatero

1 reference

18 August 2017

Marcelo Gottschalk

1 reference

18 August 2017

Taryn B T Athey

1 reference

18 August 2017

Sonia Lacouture

series ordinal

1 reference

18 August 2017

Daisuke Takamatsu

series ordinal

1 reference

18 August 2017

22 July 2016

1 reference

18 August 2017

1 reference

18 August 2017

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18 August 2017

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18 August 2017

162

1 reference

Creative Commons Attribution 4.0 International

18 August 2017

start time

22 July 2016

1 reference

April 2022 Public Data File from Crossref

copyrighted

0 references

cites work

Explaining the Serological Characteristics of Streptococcus suis Serotypes 1 and 1/2 from Their Capsular Polysaccharide Structure and Biosynthesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957933

Streptococcus suis, an important pig pathogen and emerging zoonotic agent-an update on the worldwide distribution based on serotyping and sequence typing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957933

Whole-genome sequencing in outbreak analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957933

Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957933

SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957933

Streptococcus suis serotyping by a new multiplex PCR.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957933

Deriving group A Streptococcus typing information from short-read whole-genome sequencing data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957933

Development of a two-step multiplex PCR assay for typing of capsular polysaccharide synthesis gene clusters of Streptococcus suis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957933

Development of multiplex PCR assays for the identification of the 33 serotypes of Streptococcus suis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957933

ACMG clinical laboratory standards for next-generation sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957933

Rapid bacterial genome sequencing: methods and applications in clinical microbiology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957933

Genetic analysis of capsular polysaccharide synthesis gene clusters from all serotypes of Streptococcus suis: potential mechanisms for generation of capsular variation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957933

An integrated pipeline for de novo assembly of microbial genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957933

Routine use of microbial whole genome sequencing in diagnostic and public health microbiology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957933

Comparative genomic analysis of Streptococcus suis reveals significant genomic diversity among different serotypes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957933

Streptococcus suis: a new emerging or an old neglected zoonotic pathogen?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957933

Streptococcus suis infections in humans: the Chinese experience and the situation in North America

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957933

Whole-genome analysis of human influenza A virus reveals multiple persistent lineages and reassortment among recent H3N2 viruses

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957933

Biochemical analysis, cpn60 and 16S rDNA sequence data indicate that Streptococcus suis serotypes 32 and 34, isolated from pigs, are Streptococcus orisratti

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957933

The cps genes of Streptococcus suis serotypes 1, 2, and 9: development of rapid serotype-specific PCR assays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957933

Identification and characterization of the cps locus of Streptococcus suis serotype 2: the capsule protects against phagocytosis and is an important virulence factor

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957933

Use of polyvalent coagglutination reagents for serotyping of Streptococcus suis.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957933

Repeats in an extracellular protein of weakly pathogenic strains of Streptococcus suis type 2 are absent in pathogenic strains

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957933

Identification, purification, and characterization of a thiol-activated hemolysin (suilysin) of Streptococcus suis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957933

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957933

Description of 14 new capsular types of Streptococcus suis.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957933

Cloning and nucleotide sequence of the gene encoding the 136-kilodalton surface protein (muramidase-released protein) of Streptococcus suis type 2.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957933

The cps locus of Streptococcus suis serotype 2: genetic determinant for the synthesis of sialic acid

21 June 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12866-016-0782-8

Development of an appropriate PCR system for the reclassification of Streptococcus suis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12866-016-0782-8

Structure determination of Streptococcus suis serotype 14 capsular polysaccharide

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12866-016-0782-8

Structure determination of Streptococcus suis serotype 2 capsular polysaccharide

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12866-016-0782-8

Loss of capsule among Streptococcus suis isolates from porcine endocarditis and its biological significance

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12866-016-0782-8

Virulence-associated gene profiling of Streptococcus suis isolates by PCR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12866-016-0782-8

Reappraisal of the taxonomy of Streptococcus suis serotypes 20, 22, 26, and 33 based on DNA-DNA homology and sodA and recN phylogenies

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957933

Production of muraminidase-released protein (MRP), extracellular factor (EF) and suilysin by field isolates of Streptococcus suis capsular types 2, 1/2, 9, 7 and 3 isolated from swine in France

25 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27449127

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Characterization of Streptococcus suis capsular type 2 haemolysin

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27449127

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S12866-016-0782-8

1 reference

Dimensions Publication ID

18 August 2017

0 references

1 reference

18 August 2017

PubMed publication ID

27449127

1 reference