miRge - A Multiplexed Method of Processing Small RNA-Seq Data to Determine MicroRNA Entropy (Q31023894)

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English	miRge - A Multiplexed Method of Processing Small RNA-Seq Data to Determine MicroRNA Entropy	scientific article

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instance of

scholarly article

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stated in

Europe PubMed Central

PMC publication ID

4646525

retrieved

13 August 2017

title

miRge - A Multiplexed Method of Processing Small RNA-Seq Data to Determine MicroRNA Entropy (English)

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stated in

Europe PubMed Central

PMC publication ID

4646525

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13 August 2017

main subject

RNA sequencing

0 references

microRNA

1 reference

based on heuristic

inferred from title

RNA-Seq

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based on heuristic

inferred from title

author

John M Ashton

series ordinal

6

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Europe PubMed Central

PMC publication ID

4646525

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571139%20AND%20SRC:MED&resulttype=core&format=json

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7 June 2020

Toby Cornish

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7

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Europe PubMed Central

PMC publication ID

4646525

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571139%20AND%20SRC:MED&resulttype=core&format=json

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7 June 2020

Marc K. Halushka

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9

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Europe PubMed Central

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4646525

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571139%20AND%20SRC:MED&resulttype=core&format=json

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7 June 2020

author name string

Alexander S Baras

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1

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Europe PubMed Central

PMC publication ID

4646525

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571139%20AND%20SRC:MED&resulttype=core&format=json

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7 June 2020

Christopher J Mitchell

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2

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4646525

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571139%20AND%20SRC:MED&resulttype=core&format=json

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7 June 2020

Jason R Myers

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3

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Europe PubMed Central

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4646525

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571139%20AND%20SRC:MED&resulttype=core&format=json

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7 June 2020

Simone Gupta

series ordinal

4

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4646525

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571139%20AND%20SRC:MED&resulttype=core&format=json

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7 June 2020

Lien-Chun Weng

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5

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Europe PubMed Central

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4646525

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571139%20AND%20SRC:MED&resulttype=core&format=json

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7 June 2020

Akhilesh Pandey

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8

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4646525

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571139%20AND%20SRC:MED&resulttype=core&format=json

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7 June 2020

language of work or name

English

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publication date

16 November 2015

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Europe PubMed Central

PMC publication ID

4646525

retrieved

13 August 2017

published in

PLOS One

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Europe PubMed Central

PMC publication ID

4646525

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571139%20AND%20SRC:MED&resulttype=core&format=json

retrieved

7 June 2020

volume

10

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Europe PubMed Central

PMC publication ID

4646525

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571139%20AND%20SRC:MED&resulttype=core&format=json

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7 June 2020

issue

11

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Europe PubMed Central

PMC publication ID

4646525

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571139%20AND%20SRC:MED&resulttype=core&format=json

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7 June 2020

page(s)

e0143066

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4646525

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retrieved

7 June 2020

copyright license

Creative Commons Attribution 4.0 International

start time

16 November 2015

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stated in

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Chimira: analysis of small RNA sequencing data and microRNA modifications

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4646525

retrieved

21 June 2018

sRNAtoolbox: an integrated collection of small RNA research tools

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4646525

retrieved

21 June 2018

Next-generation sequencing reveals novel differentially regulated mRNAs, lncRNAs, miRNAs, sdRNAs and a piRNA in pancreatic cancer

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4646525

retrieved

21 June 2018

Entropy-based model for miRNA isoform analysis.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4646525

retrieved

21 June 2018

5' isomiR variation is of functional and evolutionary importance

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4646525

retrieved

21 June 2018

Lessons from miR-143/145: the importance of cell-type localization of miRNAs

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4646525

retrieved

21 June 2018

A challenge for miRNA: multiple isomiRs in miRNAomics

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4646525

retrieved

21 June 2018

A critical evaluation of microRNA biomarkers in non-neoplastic disease

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4646525

retrieved

21 June 2018

Sequencing depth and coverage: key considerations in genomic analyses

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4646525

retrieved

21 June 2018

miRBase: annotating high confidence microRNAs using deep sequencing data

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4646525

retrieved

21 June 2018

omiRas: a Web server for differential expression analysis of miRNAs derived from small RNA-Seq data

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4646525

retrieved

21 June 2018

Identification of differentially expressed microRNAs across the developing human brain

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4646525

retrieved

21 June 2018

Kraken: a set of tools for quality control and analysis of high-throughput sequence data

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4646525

retrieved

21 June 2018

Genetic regulation of human adipose microRNA expression and its consequences for metabolic traits

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4646525

retrieved

21 June 2018

The miRNA profile of human pancreatic islets and beta-cells and relationship to type 2 diabetes pathogenesis

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4646525

retrieved

21 June 2018

Identification of miRNA signatures during the differentiation of hESCs into retinal pigment epithelial cells

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4646525

retrieved

21 June 2018

High-throughput assessment of microRNA activity and function using microRNA sensor and decoy libraries

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4646525

retrieved

21 June 2018

MicroRNA profiling: approaches and considerations

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4646525

retrieved

21 June 2018

MicroRNA profiling of diverse endothelial cell types

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4646525

retrieved

21 June 2018

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4646525

retrieved

21 June 2018

miRExpress: analyzing high-throughput sequencing data for profiling microRNA expression

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4646525

retrieved

21 June 2018

miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4646525

retrieved

21 June 2018

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4646525

retrieved

21 June 2018

GtRNAdb: a database of transfer RNA genes detected in genomic sequence

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4646525

retrieved

21 June 2018

Mapping and quantifying mammalian transcriptomes by RNA-Seq

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4646525

retrieved

21 June 2018

Rfam: annotating non-coding RNAs in complete genomes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4646525

retrieved

21 June 2018

MicroRNAs: genomics, biogenesis, mechanism, and function

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4646525

retrieved

21 June 2018

Vienna RNA secondary structure server

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4646525

retrieved

21 June 2018

A novel form of tissue-specific RNA processing produces apolipoprotein-B48 in intestine

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4646525

retrieved

21 June 2018

Evaluation of quantitative miRNA expression platforms in the microRNA quality control (miRQC) study

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4646525

retrieved

25 November 2018

Human embryonic genes re-expressed in cancer cells

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4646525

retrieved

25 November 2018

Genome-wide identification of SNPs in microRNA genes and the SNP effects on microRNA target binding and biogenesis

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/26571139

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Consistent isomiR expression patterns and 3' addition events in miRNA gene clusters and families implicate functional and evolutionary relationships

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/26571139

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Lack of detectable oral bioavailability of plant microRNAs after feeding in mice

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/26571139

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

DOI

10.1371/JOURNAL.PONE.0143066

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stated in

Europe PubMed Central

PMC publication ID

4646525

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571139%20AND%20SRC:MED&resulttype=core&format=json

retrieved

7 June 2020

ADS bibcode

2015PLoSO..1043066B

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PMC publication ID

4646525

1 reference

stated in

Europe PubMed Central

PMC publication ID

4646525

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571139%20AND%20SRC:MED&resulttype=core&format=json

retrieved

7 June 2020

PubMed publication ID

26571139

1 reference

stated in

Europe PubMed Central

PMC publication ID

4646525

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26571139%20AND%20SRC:MED&resulttype=core&format=json

retrieved

7 June 2020

ResearchGate publication ID

284020882

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