Efficient processing and analysis of large-scale light-sheet microscopy data (Q31000174)

28 June 2017

title

Efficient processing and analysis of large-scale light-sheet microscopy data (English)

1 reference

28 June 2017

Yinan Wan

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Philipp J Keller

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William C Lemon

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Amat F

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28 June 2017

Höckendorf B

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28 June 2017

McDole K

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28 June 2017

language of work or name

English

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publication date

1 October 2015

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28 June 2017

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28 June 2017

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28 June 2017

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28 June 2017

page(s)

1679-1696

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Orthogonal-plane fluorescence optical sectioning: three-dimensional imaging of macroscopic biological specimens.

28 June 2017

cites work

2 references

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

21 January 2018

https://pubmed.ncbi.nlm.nih.gov/26426501

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

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Optical sectioning deep inside live embryos by selective plane illumination microscopy

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Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy

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Whole-brain functional imaging at cellular resolution using light-sheet microscopy

21 January 2018

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Spatially isotropic four-dimensional imaging with dual-view plane illumination microscopy

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Multiview light-sheet microscope for rapid in toto imaging.

21 January 2018

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Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy

21 January 2018

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High-speed panoramic light-sheet microscopy reveals global endodermal cell dynamics

21 January 2018

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Fast three-dimensional fluorescence imaging of activity in neural populations by objective-coupled planar illumination microscopy

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Deep and fast live imaging with two-photon scanned light-sheet microscopy

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Noninvasive imaging beyond the diffraction limit of 3D dynamics in thickly fluorescent specimens

21 January 2018

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Lattice light-sheet microscopy: imaging molecules to embryos at high spatiotemporal resolution

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Fast, high-contrast imaging of animal development with scanned light sheet-based structured-illumination microscopy

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Quantitative fluorescence imaging of protein diffusion and interaction in living cells

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Imaging morphogenesis: technological advances and biological insights

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Advances in whole-embryo imaging: a quantitative transition is underway

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Light-sheet fluorescence microscopy for quantitative biology

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Slicing embryos gently with laser light sheets

21 January 2018

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The third dimension bridges the gap between cell culture and live tissue

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Light-sheet imaging for systems neuroscience

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Visualizing whole-brain activity and development at the single-cell level using light-sheet microscopy

21 January 2018

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Live imaging of nervous system development and function using light-sheet microscopy

21 January 2018

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Imaging in systems biology

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Reconstructing embryonic development

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Dynamic analyses of Drosophila gastrulation provide insights into collective cell migration

21 January 2018

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Automated sorting of live C. elegans using laFACS.

21 January 2018

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Mechanical control of morphogenesis by Fat/Dachsous/Four-jointed planar cell polarity pathway

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Automated analysis of embryonic gene expression with cellular resolution in C. elegans.

21 January 2018

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Analysis of cell fate from single-cell gene expression profiles in C. elegans

21 January 2018

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Multi-cellular rosettes in the mouse visceral endoderm facilitate the ordered migration of anterior visceral endoderm cells

21 January 2018

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Specified neural progenitors sort to form sharp domains after noisy Shh signaling.

21 January 2018

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De novo inference of systems-level mechanistic models of development from live-imaging-based phenotype analysis.

21 January 2018

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Fast functional imaging of multiple brain regions in intact zebrafish larvae using selective plane illumination microscopy

21 January 2018

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Whole-central nervous system functional imaging in larval Drosophila

21 January 2018

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The brain activity map project and the challenge of functional connectomics

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CATMAID: collaborative annotation toolkit for massive amounts of image data

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Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data

21 January 2018

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Development of the annelid axochord: insights into notochord evolution

21 January 2018

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Software for bead-based registration of selective plane illumination microscopy data

21 January 2018

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Automated cell lineage tracing in Caenorhabditis elegans

21 January 2018

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The lineaging of fluorescently-labeled Caenorhabditis elegans embryos with StarryNite and AceTree

21 January 2018

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Quantitative semi-automated analysis of morphogenesis with single-cell resolution in complex embryos

21 January 2018

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Cell lineage reconstruction of early zebrafish embryos using label-free nonlinear microscopy.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Fast segmentation of stained nuclei in terabyte-scale, time resolved 3D microscopy image stacks

21 January 2018

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Graphical model for joint segmentation and tracking of multiple dividing cells

21 January 2018

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OMERO: flexible, model-driven data management for experimental biology

21 January 2018

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In toto imaging of embryogenesis with confocal time-lapse microscopy

21 January 2018

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V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets

21 January 2018

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BigDataViewer: visualization and processing for large image data sets

21 January 2018

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Optimization of a GCaMP Calcium Indicator for Neural Activity Imaging

21 January 2018

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Ultrasensitive fluorescent proteins for imaging neuronal activity

21 January 2018

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A computational statistics approach for estimating the spatial range of morphogen gradients

21 January 2018

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OpenSPIM: an open-access light-sheet microscopy platform.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2015.111

OpenSpinMicroscopy: an open-source integrated microscopy platform.

21 January 2018

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Network anatomy and in vivo physiology of visual cortical neurons

21 January 2018

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Advanced CLARITY for rapid and high-resolution imaging of intact tissues

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Whole-brain imaging with single-cell resolution using chemical cocktails and computational analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Ultramicroscopy: three-dimensional visualization of neuronal networks in the whole mouse brain.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Fiji: an open-source platform for biological-image analysis

21 January 2018

1 reference

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NIH Image to ImageJ: 25 years of image analysis

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Imaging plant growth in 4D: robust tissue reconstruction and lineaging at cell resolution.

21 January 2018

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31 March 2020

Identifiers

DOI

10.1038/NPROT.2015.111

1 reference

Dimensions Publication ID

28 June 2017

1052227147

0 references

1 reference