A comparison of microarray and MPSS technology platforms for expression analysis of Arabidopsis (Q30838173)

15 October 2017

A comparison of microarray and MPSS technology platforms for expression analysis of Arabidopsis (English)

1 reference

15 October 2017

1 reference

PubMed publication ID

27 June 2017

Magnus Rattray

1 reference

15 October 2017

Junfeng Chen

1 reference

15 October 2017

Vikas Agrawal

1 reference

15 October 2017

Marilyn A L West

1 reference

15 October 2017

Dina A St Clair

1 reference

15 October 2017

Richard W Michelmore

1 reference

15 October 2017

Sean J Coughlan

1 reference

15 October 2017

language of work or name

English

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publication date

12 November 2007

1 reference

15 October 2017

1 reference

15 October 2017

1 reference

15 October 2017

414

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A comparison of global gene expression measurement technologies in Arabidopsis thaliana

15 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2190774

Comparison of hybridization-based and sequencing-based gene expression technologies on biological replicates.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2190774

Analysis of tag-position bias in MPSS technology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2190774

Application of Affymetrix array and Massively Parallel Signature Sequencing for identification of genes involved in prostate cancer progression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2190774

An atlas of human gene expression from massively parallel signature sequencing (MPSS).

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2190774

Evaluation of the similarity of gene expression data estimated with SAGE and Affymetrix GeneChips

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2190774

A comparative analysis of transcript abundance using SAGE and Affymetrix arrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2190774

The use of MPSS for whole-genome transcriptional analysis in Arabidopsis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2190774

Evaluation of gene expression measurements from commercial microarray platforms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2190774

Microarray data normalization and transformation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2190774

Differential gene expression patterns revealed by oligonucleotide versus long cDNA arrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2190774

Analysis of matched mRNA measurements from two different microarray technologies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2190774

Alternative splicing and genome complexity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2190774

Diverse transcriptional initiation revealed by fine, large-scale mapping of mRNA start sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2190774

Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2190774

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2190774

Importance of replication in microarray gene expression studies: statistical methods and evidence from repetitive cDNA hybridizations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2190774

Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2190774

In vitro cloning of complex mixtures of DNA on microbeads: physical separation of differentially expressed cDNAs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2190774

A comparison of gel-based, nylon filter and microarray techniques to detect differential RNA expression in plants

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2190774

Expression monitoring by hybridization to high-density oligonucleotide arrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2190774

Characterization of the yeast transcriptome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2190774

Serial analysis of gene expression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2190774

Quantitative monitoring of gene expression patterns with a complementary DNA microarray

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2190774

A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2190774

Comparison of oligonucleotide-microarray and serial analysis of gene expression (SAGE) in transcript profiling analysis of megakaryocytes derived from CD34+ cells

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2190774

Evaluation of techniques using amplified nucleic acid probes for gene expression profiling

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2190774

Meta-analysis of microarrays: interstudy validation of gene expression profiles reveals pathway dysregulation in prostate cancer.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2190774

Direct comparison of GeneChip and SAGE on the quantitative accuracy in transcript profiling analysis

25 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17997849

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Hierarchical clustering schemes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17997849

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-8-414

1 reference

Dimensions Publication ID

15 October 2017

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2164-8-414

1 reference

15 October 2017

PubMed publication ID

17997849

1 reference