SPINE: an integrated tracking database and data mining approach for identifying feasible targets in high-throughput structural proteomics (Q30655358)

9 September 2017

SPINE: an integrated tracking database and data mining approach for identifying feasible targets in high-throughput structural proteomics (English)

1 reference

9 September 2017

0 references

0 references

P Bertone

0 references

M Gerstein

1 reference

9 September 2017

Y Kluger

1 reference

9 September 2017

N Lan

1 reference

9 September 2017

D Zheng

1 reference

9 September 2017

D Christendat

1 reference

9 September 2017

A Yee

1 reference

9 September 2017

A M Edwards

1 reference

9 September 2017

C H Arrowsmith

1 reference

9 September 2017

G T Montelione

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9 September 2017

language of work or name

English

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publication date

1 July 2001

1 reference

9 September 2017

Nucleic Acids Research

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9 September 2017

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9 September 2017

1 reference

9 September 2017

2884-2898

1 reference

PartsList: a web-based system for dynamically ranking protein folds based on disparate attributes, including whole-genome expression and interaction information

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55760

Structural proteomics of an archaeon

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55760

BIND--a data specification for storing and describing biomolecular interactions, molecular complexes and pathways.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55760

Whole-genome trees based on the occurrence of folds and orthologs: implications for comparing genomes on different levels

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55760

Systematic management and analysis of yeast gene expression data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55760

DIP: the database of interacting proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55760

20 June 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55760

ProtoMap: automatic classification of protein sequences and hierarchy of protein families

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55760

The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55760

The protein information resource (PIR)

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55760

MIPS: a database for genomes and protein sequences

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55760

DNA data bank of Japan (DDBJ) in collaboration with mass sequencing teams

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55760

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55760

Organization of heterogeneous scientific data using the EAV/CR representation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55760

Comparing genomes in terms of protein structure: surveys of a finite parts list.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55760

How representative are the known structures of the proteins in a complete genome? A comprehensive structural census

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55760

Patterns of protein-fold usage in eight microbial genomes: a comprehensive structural census

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55760

The PRESAGE database for structural genomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55760

Comprehensive, comprehensible, distributed and intelligent databases: current status

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55760

A database of macromolecular motions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55760

A structural census of genomes: comparing bacterial, eukaryotic, and archaeal genomes in terms of protein structure

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55760

SGD: Saccharomyces Genome Database

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55760

A genomic perspective on protein families

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55760

CATH--a hierarchic classification of protein domain structures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55760

FlyBase: a Drosophila database. The FlyBase consortium

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55760

Analysis of compositionally biased regions in sequence databases

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55760

SCOP: a structural classification of proteins database for the investigation of sequences and structures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55760

Identifying nonpolar transbilayer helices in amino acid sequences of membrane proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55760

Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55760

The EMBL Nucleotide Sequence Database

20 June 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/11433035

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Protein folds in the worm genome

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/11433035

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/29.13.2884

1 reference

journals/nar/BertoneKLZCYEAMG01

9 September 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

9 September 2017

PubMed publication ID

11433035

1 reference