Population genomic and genome-wide association studies of agroclimatic traits in sorghum (Q30583217)

14 August 2017

Population genomic and genome-wide association studies of agroclimatic traits in sorghum (English)

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genome-wide association study

14 August 2017

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PubMed publication ID

25 June 2017

Geoffrey P Morris

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Trushar Shah

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Oscar Riera-Lizarazu

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Punna Ramu

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14 August 2017

Santosh P Deshpande

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14 August 2017

C Thomas Hash

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14 August 2017

Hari D Upadhyaya

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14 August 2017

Patrick J Brown

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14 August 2017

Charlotte B Acharya

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14 August 2017

Sharon E Mitchell

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14 August 2017

James Harriman

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14 August 2017

Jeffrey C Glaubitz

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14 August 2017

Stephen Kresovich

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14 August 2017

language of work or name

English

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publication date

24 December 2012

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Proceedings of the National Academy of Sciences of the United States of America

14 August 2017

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14 August 2017

110

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14 August 2017

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14 August 2017

453-458

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Genome-wide genetic changes during modern breeding of maize

14 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545811

Comparative population genomics of maize domestication and improvement

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545811

Parallel domestication of the Shattering1 genes in cereals

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545811

Genetic structure, linkage disequilibrium and signature of selection in Sorghum: lessons from physically anchored DArT markers

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545811

Crop genomics: advances and applications

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545811

Genome-wide association studies in plants: the missing heritability is in the field

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545811

Solutions for a cultivated planet

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545811

Coincident light and clock regulation of pseudoresponse regulator protein 37 (PRR37) controls photoperiodic flowering in sorghum

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545811

A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545811

Mixed linear model approach adapted for genome-wide association studies

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545811

Genetic characterization and linkage disequilibrium estimation of a global maize collection using SNP markers

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545811

Fast model-based estimation of ancestry in unrelated individuals

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545811

Tracking footprints of maize domestication and evidence for a massive selective sweep on chromosome 10.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545811

The Sequence Alignment/Map format and SAMtools

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545811

The Sorghum bicolor genome and the diversification of grasses

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545811

Efficient mapping of plant height quantitative trait loci in a sorghum association population with introgressed dwarfing genes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545811

Prioritizing climate change adaptation needs for food security in 2030.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545811

The extent of linkage disequilibrium in rice (Oryza sativa L.).

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545811

Global dissemination of a single mutation conferring white pericarp in rice

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545811

Recombination and linkage disequilibrium in Arabidopsis thaliana.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545811

Inferring missing genotypes in large SNP panels using fast nearest-neighbor searches over sliding windows

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545811

Recombination rate estimation in the presence of hotspots

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545811

TASSEL: software for association mapping of complex traits in diverse samples

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545811

Equilibrium processes cannot explain high levels of short- and medium-range linkage disequilibrium in the domesticated grass Sorghum bicolor

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545811

ABERRANT PANICLE ORGANIZATION 1 temporally regulates meristem identity in rice

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545811

APE: Analyses of Phylogenetics and Evolution in R language

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545811

Structure of linkage disequilibrium in plants

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545811

Genetic diversity and selection in the maize starch pathway

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545811

Evolution, consequences and future of plant and animal domestication

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545811

The indeterminate gene encodes a zinc finger protein and regulates a leaf-generated signal required for the transition to flowering in maize

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545811

The sorghum photoperiod sensitivity gene, Ma3, encodes a phytochrome B.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545811

Comparative analysis of QTLs affecting plant height and maturity across the Poaceae, in reference to an interspecific sorghum population.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545811

Genome-wide association studies of 14 agronomic traits in rice landraces.

20 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1215985110

Variability of grain quality in sorghum: association with polymorphism in Sh2, Bt2, SssI, Ae1, Wx and O2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1215985110

Loss of an MDR transporter in compact stalks of maize br2 and sorghum dw3 mutants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1215985110

GAPIT: genome association and prediction integrated tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1215985110

A global view of genetic diversity in cultivated sorghums using a core collection

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545811

26 November 2018

Identifiers

DOI

10.1073/PNAS.1215985110

1 reference

14 August 2017

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14 August 2017

PubMed publication ID

23267105

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