Probing the Xenopus laevis inner ear transcriptome for biological function (Q30530777)

14 August 2017

Probing the Xenopus laevis inner ear transcriptome for biological function (English)

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14 August 2017

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Elba E Serrano

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14 August 2017

TuShun R Powers

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14 August 2017

Selene M Virk

series ordinal

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14 August 2017

Casilda Trujillo-Provencio

series ordinal

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14 August 2017

language of work or name

English

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publication date

8 June 2012

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14 August 2017

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14 August 2017

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14 August 2017

225

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describes a project that uses

14 August 2017

affy

object named as

affy

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Optimization of gene delivery methods in Xenopus laevis kidney (A6) and Chinese hamster ovary (CHO) cell lines for heterologous expression of Xenopus inner ear genes

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Lineage-specific evolution of the vertebrate Otopetrin gene family revealed by comparative genomic analyses

20 June 2018

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Development of gene therapy for inner ear disease: Using bilateral vestibular hypofunction as a vehicle for translational research.

20 June 2018

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Hearing loss: a common disorder caused by many rare alleles

20 June 2018

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Design, validation and annotation of transcriptome-wide oligonucleotide probes for the oligochaete annelid Eisenia fetida

20 June 2018

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BMP signaling is necessary for patterning the sensory and nonsensory regions of the developing mammalian cochlea

20 June 2018

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The genome of the Western clawed frog Xenopus tropicalis

20 June 2018

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Strategies for enhanced annotation of a microarray probe set.

20 June 2018

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Comparative transcriptomic analysis of follicle-enclosed oocyte maturational and developmental competence acquisition in two non-mammalian vertebrates

20 June 2018

1 reference

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A review of statistical methods for preprocessing oligonucleotide microarrays.

20 June 2018

1 reference

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Downstream targets of GATA3 in the vestibular sensory organs of the inner ear.

20 June 2018

1 reference

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Xenbase: gene expression and improved integration

20 June 2018

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Disorders of balance and vestibular function in US adults: data from the National Health and Nutrition Examination Survey, 2001-2004.

20 June 2018

1 reference

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Feathers and fins: non-mammalian models for hair cell regeneration

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

RNA isolation from Xenopus inner ear sensory endorgans for transcriptional profiling and molecular cloning

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

An ontology for Xenopus anatomy and development

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

Transgenesis procedures in Xenopus

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

Mouse models to study inner ear development and hereditary hearing loss

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

Analysis and functional evaluation of the hair-cell transcriptome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

Large scale gene expression profiles of regenerating inner ear sensory epithelia

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

Ion channel gene expression in the inner ear

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

Plasma membrane Ca2+-ATPase isoforms in frog crista ampullaris: identification of PMCA1 and PMCA2 specific splice variants.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

Gene expression profiling analysis of the inner ear.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

The Universal Protein Resource (UniProt).

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

Active hair bundle movements in auditory hair cells

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

Supporting sensory transduction: cochlear fluid homeostasis and the endocochlear potential

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

Predicting candidate genes for human deafness disorders: a bioinformatics approach

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

Non-syndromic, autosomal-recessive deafness

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

Hair cell regeneration: an exciting phenomenon...but will restoring hearing and balance be possible?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

From deafness genes to hearing mechanisms: harmony and counterpoint

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

Inner ear formation during the early larval development of Xenopus laevis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

Keynote review: The auditory system, hearing loss and potential targets for drug development.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

RESOURCERER: a database for annotating and linking microarray resources within and across species

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

XenDB: full length cDNA prediction and cross species mapping in Xenopus laevis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

Differential expression of genes within the cochlea as defined by a custom mouse inner ear microarray

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

Preprocessing of oligonucleotide array data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

Ringing in the new ear: resolution of cell interactions in otic development

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

Neomycin-induced hair cell death and rapid regeneration in the lateral line of zebrafish (Danio rerio).

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

Gene expression differences in quiescent versus regenerating hair cells of avian sensory epithelia: implications for human hearing and balance disorders

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

DAVID: Database for Annotation, Visualization, and Integrated Discovery

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

Identification of gene expression profiles in rat ears with cDNA microarrays

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

Molecular screens for inner ear genes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

The molecular architecture of the inner ear.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

An inner ear gene expression database

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

Gene discovery in the auditory system: characterization of additional cochlear-expressed sequences

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

The human genome browser at UCSC

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

Genetics, genomics and gene discovery in the auditory system

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

Identification of genes expressed in the Xenopus inner ear.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

Negative hair-bundle stiffness betrays a mechanism for mechanical amplification by the hair cell

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

Hair cells, hearing and hopping: a field guide to hair cell physiology in the frog.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

Deafness genes: expressions of surprise

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

Development of the Xenopus laevis VIIIth cranial nerve: increase in number and area of axons of the saccular and papillar branches

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

20 June 2018

How the ear's works work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

Hair cells: transduction, tuning, and transmission in the inner ear.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

Basic local alignment search tool

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

Middle ear muscles of the frog

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

Origins of inner ear sensory organs revealed by fate map and time-lapse analyses.

20 June 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-225

Cell proliferation during the early compartmentalization of the Xenopus laevis inner ear.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-225

Microarray-based analysis of early development in Xenopus laevis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-225

Gene profiling during neural induction in Xenopus laevis: regulation of BMP signaling by post-transcriptional mechanisms and TAB3, a novel TAK1-binding protein.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-225

Global gene expression profiling and cluster analysis in Xenopus laevis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-225

Comparison of Affymetrix GeneChip expression measures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-225

FXYD6 is a novel regulator of Na,K-ATPase expressed in the inner ear.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

A compendium of mouse knockouts with inner ear defects

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

The transduction channel of hair cells from the bull-frog characterized by noise analysis.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532188

Three-dimensional morphology of inner ear development inXenopus laevis

26 November 2018

1 reference

12 December 2020

Ultrastructural correlates of mechanoelectrical transduction in hair cells of the bullfrog's internal ear

1 reference

12 December 2020

Protein profile of human perilymph: in search of markers for the diagnosis of perilymph fistula and other inner ear disease

1 reference

12 December 2020

Quantity, bundle types, and distribution of hair cells in the sacculus of Xenopus laevis during development

1 reference

12 December 2020

Global analysis of gene expression in Xenopus hindlimbs during stage-dependent complete and incomplete regeneration

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2164-13-225

1 reference

Dimensions Publication ID

14 August 2017

0 references

1 reference

14 August 2017

PubMed publication ID

22676585

1 reference