Biological assessment of robust noise models in microarray data analysis (Q30498407)

17 October 2017

Biological assessment of robust noise models in microarray data analysis (English)

1 reference

17 October 2017

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21252077

22 November 2024

A. Posekany

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21252077

22 November 2024

K. Felsenstein

series ordinal

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21252077

22 November 2024

P. Sykacek

series ordinal

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21252077

22 November 2024

language of work or name

English

0 references

publication date

19 January 2011

1 reference

PMC publication ID

3051324

full work available at URL

17 October 2017

https://academic.oup.com/bioinformatics/article-pdf/27/6/807/643408/btr018.pdf

file format

Portable Document Format

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21252077

http://bioinformatics.oxfordjournals.org/cgi/content/abstract/27/6/807

22 November 2024

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21252077

https://europepmc.org/articles/PMC3051324

22 November 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21252077

https://europepmc.org/articles/PMC3051324?pdf=render

22 November 2024

file format

Portable Document Format

online access status

open access

content deliverer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21252077

https://academic.oup.com/bioinformatics/article-pdf/27/6/807/48867370/bioinformatics_27_6_807.pdf

22 November 2024

file format

Portable Document Format

1 reference

Crossref

DOI

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTR018

22 November 2024

1 reference

17 October 2017

1 reference

17 October 2017

1 reference

17 October 2017

807-814

1 reference

Multivariate hierarchical Bayesian model for differential gene expression analysis in microarray experiments

17 October 2017

1 reference

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Assessment of diet-induced obese rats as an obesity model by comparative functional genomics

20 June 2018

1 reference

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Human and chimpanzee gene expression differences replicated in mice fed different diets

20 June 2018

1 reference

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A Marfan syndrome gene expression phenotype in cultured skin fibroblasts

20 June 2018

1 reference

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Understanding endothelial cell apoptosis: what can the transcriptome, glycome and proteome reveal?

20 June 2018

1 reference

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Bayesian modelling of shared gene function

20 June 2018

1 reference

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The role of mtDNA mutations in the pathogenesis of age-related hearing loss in mice carrying a mutator DNA polymerase gamma

20 June 2018

1 reference

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Gene function classification using Bayesian models with hierarchy-based priors

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3051324

Generalization of DNA microarray dispersion properties: microarray equivalent of t-distribution

20 June 2018

1 reference

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Targeted disruption of glycerol kinase gene in mice: expression analysis in liver shows alterations in network partners related to glycerol kinase activity

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3051324

Nonparametric methods for microarray data based on exchangeability and borrowed power

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3051324

Nonparametric tests for differential gene expression and interaction effects in multi-factorial microarray experiments

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3051324

A tractable probabilistic model for Affymetrix probe-level analysis across multiple chips

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3051324

Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3051324

Profiling gene expression during the differentiation and development of the murine embryonic gonad

20 June 2018

1 reference

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FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3051324

Incipient Alzheimer's disease: microarray correlation analyses reveal major transcriptional and tumor suppressor responses

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3051324

Application of genomic technologies: DNA microarrays and metabolic profiling of obesity in the hypothalamus and in subcutaneous fat.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3051324

Normality of oligonucleotide microarray data and implications for parametric statistical analyses

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3051324

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3051324

Gene expression profiling for prediction of clinical characteristics of breast cancer

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3051324

DAVID: Database for Annotation, Visualization, and Integrated Discovery

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3051324

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3051324

Statistics review 6: Nonparametric methods

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3051324

Nonparametric methods for identifying differentially expressed genes in microarray data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3051324

Variance stabilization applied to microarray data calibration and to the quantification of differential expression

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3051324

Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3051324

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3051324

A Bayesian framework for the analysis of microarray expression data: regularized t -test and statistical inferences of gene changes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3051324

Significance analysis of microarrays applied to the ionizing radiation response

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3051324

Gene ontology: tool for the unification of biology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3051324

The detection of blur in affymetrix GeneChips

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3051324

A note on oligonucleotide expression values not being normally distributed

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3051324

Cell identity mediates the response of Arabidopsis roots to abiotic stress.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3051324

Transcriptome analyses give insights into selenium-stress responses and selenium tolerance mechanisms in Arabidopsis.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3051324

Fully Bayesian mixture model for differential gene expression: simulations and model checks.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3051324

Multiple mechanisms limit the duration of wakefulness in Drosophila brain

26 November 2018

1 reference

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Probe-level measurement error improves accuracy in detecting differential gene expression

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3051324

Bayesian robust inference for differential gene expression in microarrays with multiple samples.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3051324

Novel genes associated with malignant melanoma but not benign melanocytic lesions

26 November 2018

1 reference

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Gene expression profiles of intact and regenerating zebrafish retina.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3051324

Gene selection using a two-level hierarchical Bayesian model

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3051324

Identification of Differentially Expressed Genes in High‐Density Oligonucleotide Arrays Accounting for the Quantification Limits of the Technology

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3051324

Modeling of corticosteroid pharmacogenomics in rat liver using gene microarrays

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3051324

Modified nonparametric approaches to detecting differentially expressed genes in replicated microarray experiments

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21252077

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Robust ANOVA for microarray data

1 reference

COCI

https://opencitations.net/index/coci/api/v1/citations/10.1016/J.CHEMOLAB.2009.04.011

An overview of robust Bayesian analysis

31 July 2023

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTR018

22 November 2024

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTR018

22 November 2024

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTR018

Reversible jump Markov chain Monte Carlo computation and Bayesian model determination

22 November 2024

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22 November 2024

Bayesian Interpolation

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTR018

CODA: convergence diagnosis and output analysis for MCMC

22 November 2024

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTR018

22 November 2024

Identifiers

DOI

1 reference

journals/bioinformatics/PosekanyFS11

17 October 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

PMC publication ID

3051324

17 October 2017

1 reference

PMC publication ID

3051324