Phytochrome structure and signaling mechanisms. (Q30486809)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16669784%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

review article

1 reference

title

Phytochrome structure and signaling mechanisms (English)

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20 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16669784%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

Nathan C Rockwell

1 reference

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20 January 2020

Yi-Shin Su

series ordinal

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20 January 2020

publication date

1 January 2006

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Annual Review of Plant Biology

20 January 2020

published in

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20 January 2020

volume

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20 January 2020

page(s)

837-858

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Chromophore structure of the physiologically active form (P(fr)) of phytochrome

20 January 2020

cites work

1 reference

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DETECTION, ASSAY, AND PRELIMINARY PURIFICATION OF THE PIGMENT CONTROLLING PHOTORESPONSIVE DEVELOPMENT OF PLANTS.

20 June 2018

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Genetic and molecular analysis of phytochromes from the filamentous fungus Neurospora crassa

20 June 2018

1 reference

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Multiple roles of a conserved GAF domain tyrosine residue in cyanobacterial and plant phytochromes

20 June 2018

1 reference

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A chimeric photoreceptor gene, NEOCHROME, has arisen twice during plant evolution

20 June 2018

1 reference

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Phytochrome phosphorylation in plant light signaling

20 June 2018

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Phylogenetic analysis of the phytochrome superfamily reveals distinct microbial subfamilies of photoreceptors

20 June 2018

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Crystal structure of the tandem GAF domains from a cyanobacterial adenylyl cyclase: modes of ligand binding and dimerization

20 June 2018

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Light-induced conformational changes of cyanobacterial phytochrome Cph1 probed by limited proteolysis and autophosphorylation.

20 June 2018

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Light signal transduction in higher plants

20 June 2018

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Harnessing phytochrome's glowing potential

20 June 2018

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Light-regulated nuclear localization of phytochromes

20 June 2018

1 reference

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Phytochrome-mediated light signalling in Arabidopsis

20 June 2018

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Evolution of cyanobacterial and plant phytochromes

20 June 2018

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Heterodimerization of type II phytochromes in Arabidopsis

20 June 2018

1 reference

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The biliverdin chromophore binds covalently to a conserved cysteine residue in the N-terminus of Agrobacterium phytochrome Agp1

20 June 2018

1 reference

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Characterization of the requirements for localization of phytochrome B to nuclear bodies

20 June 2018

1 reference

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Light, phytochrome signalling and photomorphogenesis in Arabidopsis

20 June 2018

1 reference

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Dimerization and inter-chromophore distance of Cph1 phytochrome from Synechocystis, as monitored by fluorescence homo and hetero energy transfer

20 June 2018

1 reference

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Crystal structures and molecular mechanism of a light-induced signaling switch: The Phot-LOV1 domain from Chlamydomonas reinhardtii

20 June 2018

1 reference

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The pair of bacteriophytochromes from Agrobacterium tumefaciens are histidine kinases with opposing photobiological properties

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664748

The two GAF domains in phosphodiesterase 2A have distinct roles in dimerization and in cGMP binding

20 June 2018

1 reference

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Phytochromes control photomorphogenesis by differentially regulated, interacting signaling pathways in higher plants

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664748

Phytochrome from Agrobacterium tumefaciens has unusual spectral properties and reveals an N-terminal chromophore attachment site

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664748

Phytochrome ancestry: sensors of bilins and light.

20 June 2018

1 reference

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An enzyme with a deep trefoil knot for the active-site architecture

20 June 2018

1 reference

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Bacteriophytochrome controls photosystem synthesis in anoxygenic bacteria

20 June 2018

1 reference

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Bacteriophytochromes are photochromic histidine kinases using a biliverdin chromophore

20 June 2018

1 reference

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Phosphorylation of proteins in the light-dependent signalling pathway of a filamentous cyanobacterium.

20 June 2018

1 reference

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Inter-domain crosstalk in the phytochrome molecules

20 June 2018

1 reference

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A second photochromic bacteriophytochrome from Synechocystis sp. PCC 6803: spectral analysis and down-regulation by light

20 June 2018

1 reference

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A deeply knotted protein structure and how it might fold.

20 June 2018

1 reference

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Probing the photoreaction mechanism of phytochrome through analysis of resonance Raman vibrational spectra of recombinant analogues.

20 June 2018

1 reference

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Eukaryotic phytochromes: light-regulated serine/threonine protein kinases with histidine kinase ancestry

20 June 2018

1 reference

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Biochemical characterization of Arabidopsis wild-type and mutant phytochrome B holoproteins

20 June 2018

1 reference

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The phytofluors: a new class of fluorescent protein probes.

20 June 2018

1 reference

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A cyanobacterial phytochrome two-component light sensory system.

20 June 2018

1 reference

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Resonance raman analysis of chromophore structure in the lumi-R photoproduct of phytochrome

20 June 2018

1 reference

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Knowledge-based protein secondary structure assignment

20 June 2018

1 reference

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VMD: visual molecular dynamics

20 June 2018

1 reference

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20 June 2018

1 reference

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Signal transduction schemes of bacteria

20 June 2018

1 reference

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The anatomy of phytochrome, a unique photoreceptor in plants

20 June 2018

1 reference

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Phytochromes: photosensory perception and signal transduction

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664748

Resonance Raman analysis of the Pr and Pfr forms of phytochrome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664748

Phytochrome: a light-activated molecular switch that regulates plant gene expression

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664748

Amino acid substitution matrices from protein blocks

20 June 2018

1 reference

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Conformational flexibility of phycocyanobilin: an AM1 semiempirical study

20 June 2018

1 reference

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A light-sensing knot revealed by the structure of the chromophore-binding domain of phytochrome

26 November 2018

1 reference

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The Aspergillus nidulans phytochrome FphA represses sexual development in red light

26 November 2018

1 reference

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A new type of bacteriophytochrome acts in tandem with a classical bacteriophytochrome to control the antennae synthesis in Rhodopseudomonas palustris

26 November 2018

1 reference

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The excited-state chemistry of phycocyanobilin: a semiempirical study

26 November 2018

1 reference

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Agrobacterium phytochrome as an enzyme for the production of ZZE bilins

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664748

Sterically locked synthetic bilin derivatives and phytochrome Agp1 from Agrobacterium tumefaciens form photoinsensitive Pr- and Pfr-like adducts.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664748

Regulation of phytochrome B nuclear localization through light-dependent unmasking of nuclear-localization signals

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664748

Biochemical and spectroscopic characterization of the bacterial phytochrome of Pseudomonas aeruginosa

26 November 2018

1 reference

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Light-induced global structural changes in phytochrome A regulating photomorphogenesis in plants

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664748

Determination of the chromophore structures in the photoinduced reaction cycle of phytochrome

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664748

A new type of mutation in phytochrome A causes enhanced light sensitivity and alters the degradation and subcellular partitioning of the photoreceptor

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664748

Phytochrome phosphorylation modulates light signaling by influencing the protein-protein interaction.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664748

Photochromic biliproteins from the cyanobacterium Anabaena sp. PCC 7120: lyase activities, chromophore exchange, and photochromism in phytochrome AphA.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664748

A dominant mutation in the pea PHYA gene confers enhanced responses to light and impairs the light-dependent degradation of phytochrome A.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664748

Functional analysis of a 450-amino acid N-terminal fragment of phytochrome B in Arabidopsis.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664748

Chromophore selectivity in bacterial phytochromes: dissecting the process of chromophore attachment

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664748

Mechanism of Cph1 phytochrome assembly from stopped-flow kinetics and circular dichroism

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664748

Structural basis of a phototropin light switch

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664748

Nuclear translocation of the photoreceptor phytochrome B is necessary for its biological function in seedling photomorphogenesis

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664748

Dimers of the N-terminal domain of phytochrome B are functional in the nucleus.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664748

Phytochrome Cph1 from the cyanobacterium Synechocystis PCC6803. Purification, assembly, and quaternary structure.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664748

Defining the bilin lyase domain: lessons from the extended phytochrome superfamily

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664748

A new type of mutation in the plant photoreceptor phytochrome B causes loss of photoreversibility and an extremely enhanced light sensitivity.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664748

Bacterial photoreceptor with similarity to photoactive yellow protein and plant phytochromes

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664748

Both Subunits of the Dimeric Plant Photoreceptor Phytochrome Require Chromophore for Stability of the Far-red Light-absorbing Form

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664748

FTIR studies of phytochrome photoreactions reveal the C=O bands of the chromophore: consequences for its protonation states, conformation, and protein interaction

26 November 2018

1 reference

12 December 2020

Resonance Raman spectra of the intermediates in phototransformation of large phytochrome: deprotonation of the chromophore in the bleached intermediate

1 reference

12 December 2020

Domain structure of phytochrome from Avena sativa visualized by electron microscopy

1 reference

12 December 2020

The photoreactions of recombinant phytochrome from the cyanobacterium Synechocystis: a low-temperature UV-Vis and FT-IR spectroscopic study

1 reference

12 December 2020

Bacteriophytochromes: phytochrome-like photoreceptors from nonphotosynthetic eubacteria

1 reference

12 December 2020

Interaction of the Response Regulator ARR4 with Phytochrome B in Modulating Red Light Signaling

1 reference

12 December 2020

Resonance Raman spectroscopic study of the tryptic 39-kDa fragment of phytochrome

1 reference

12 December 2020

Illuminating Phytochrome Functions (There Is Light at the End of the Tunnel)

1 reference

12 December 2020

Fourier-Transform Resonance Raman Spectroscopy of Intermediates of the Phytochrome Photocycle

1 reference

12 December 2020

Chromophore-apoprotein interactions in Synechocystis sp. PCC6803 phytochrome Cph1

1 reference

12 December 2020

Fourier-transform infrared spectroscopy of phytochrome: difference spectra of the intermediates of the photoreactions

1 reference

12 December 2020

Heteronuclear solution-state NMR studies of the chromophore in cyanobacterial phytochrome Cph1

1 reference

12 December 2020

10.1146/ANNUREV.ARPLANT.56.032604.144208

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16669784%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16669784%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

PubMed publication ID

16669784

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16669784%20AND%20SRC:MED&resulttype=core&format=json