Genome-scale identification of Caenorhabditis elegans regulatory elements by tiling-array mapping of DNase I hypersensitive sites. (Q30440067)

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22 January 2020

title

Genome-scale identification of Caenorhabditis elegans regulatory elements by tiling-array mapping of DNase I hypersensitive sites (English)

1 reference

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22 January 2020

main subject

Caenorhabditis elegans

0 references

1 reference

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22 January 2020

1 reference

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22 January 2020

1 reference

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22 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19243610%20AND%20SRC:MED&resulttype=core&format=json

22 January 2020

Baochen Shi

1 reference

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22 January 2020

Sitong Sheng

series ordinal

1 reference

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22 January 2020

Jie Wang

series ordinal

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19243610%20AND%20SRC:MED&resulttype=core&format=json

22 January 2020

Geir Skogerbø

series ordinal

1 reference

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22 January 2020

language of work or name

English

0 references

publication date

25 February 2009

1 reference

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22 January 2020

1 reference

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22 January 2020

volume

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22 January 2020

page(s)

1 reference

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Mapping the C. elegans noncoding transcriptome with a whole-genome tiling microarray

22 January 2020

cites work

1 reference

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Identification and analysis of internal promoters in Caenorhabditis elegans operons

20 June 2018

1 reference

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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

20 June 2018

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What is a gene, post-ENCODE? History and updated definition

20 June 2018

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Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

20 June 2018

1 reference

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Parallel evolution of conserved non-coding elements that target a common set of developmental regulatory genes from worms to humans

20 June 2018

1 reference

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Flexibility and constraint in the nucleosome core landscape of Caenorhabditis elegans chromatin

20 June 2018

1 reference

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A genomic code for nucleosome positioning

20 June 2018

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DNase-chip: a high-resolution method to identify DNase I hypersensitive sites using tiled microarrays

20 June 2018

1 reference

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Evolution of small nucleolar RNAs in nematodes

20 June 2018

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Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression

20 June 2018

1 reference

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Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS)

20 June 2018

1 reference

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Genome-scale identification of nucleosome positions in S. cerevisiae

20 June 2018

1 reference

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A transcriptional regulatory element in the coding sequence of the human Bcl-2 gene.

20 June 2018

1 reference

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DNase I hypersensitivity patterns of the serglycin proteoglycan gene in resting and phorbol 12-myristate 13-acetate-stimulated human erythroleukemia (HEL), CHRF 288-11, and HL-60 cells compared with neutrophils and human umbilical vein endothelial c

20 June 2018

1 reference

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A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly

20 June 2018

1 reference

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A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

20 June 2018

1 reference

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WormBase: a cross-species database for comparative genomics

20 June 2018

1 reference

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Nonparametric methods for identifying differentially expressed genes in microarray data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651899

A global analysis of Caenorhabditis elegans operons

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651899

Quantification of DNaseI-sensitivity by real-time PCR: quantitative analysis of DNaseI-hypersensitivity of the mouse beta-globin LCR

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651899

DNase I hypersensitivity analysis of the human CCAAT enhancer binding protein epsilon (C/EBPepsilon) gene

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651899

Genome sequence of the nematode C. elegans: a platform for investigating biology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651899

A Regulatory Element within a Coding Exon Modulates Keratin 18 Gene Expression in Transgenic Mice

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651899

Nuclease hypersensitive sites in chromatin

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651899

Nuclease digestion of DNA and RNA in nuclei from young adult and senescent Caenorhabditis elegans (Nematoda).

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651899

Regulation of HumanhstExpression by an Enhancer Element Residing in the Third Exon

20 June 2018

1 reference

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Features of the structure of replicating and non-replicating chromatin in chicken erythroblasts

20 June 2018

1 reference

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Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651899

A gene-centered C. elegans protein-DNA interaction network

26 November 2018

1 reference

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Conservation, regulation, synteny, and introns in a large-scale C. briggsae-C. elegans genomic alignment

26 November 2018

1 reference

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How to find an opening (or lots of them)

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19243610

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-10-92

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19243610%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

22 January 2020

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2164-10-92

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19243610%20AND%20SRC:MED&resulttype=core&format=json

22 January 2020

PubMed publication ID

19243610

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19243610%20AND%20SRC:MED&resulttype=core&format=json