Coherent conformational degrees of freedom as a structural basis for allosteric communication (Q30410732)

14 September 2017

Coherent conformational degrees of freedom as a structural basis for allosteric communication (English)

1 reference

14 September 2017

Simon Mitternacht

0 references

Igor N Berezovsky

1 reference

14 September 2017

8 December 2011

1 reference

PLOS Computational Biology

14 September 2017

1 reference

14 September 2017

1 reference

14 September 2017

1 reference

14 September 2017

e1002301

1 reference

Creative Commons Attribution 4.0 International

14 September 2017

start time

8 December 2011

1 reference

April 2022 Public Data File from Crossref

copyrighted

0 references

cites work

Binding leverage as a molecular basis for allosteric regulation

1 reference

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Chaperonins: two rings for folding

20 June 2018

1 reference

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Conformational sampling and nucleotide-dependent transitions of the GroEL subunit probed by unbiased molecular dynamics simulations

20 June 2018

1 reference

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Sending signals dynamically

20 June 2018

1 reference

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Allosteric communication in myosin V: from small conformational changes to large directed movements

20 June 2018

1 reference

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Dynamic energy landscape view of coupled binding and protein conformational change: induced-fit versus population-shift mechanisms

20 June 2018

1 reference

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Allostery and cooperativity revisited

20 June 2018

1 reference

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Dynamic personalities of proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3234217

A hierarchy of timescales in protein dynamics is linked to enzyme catalysis

20 June 2018

1 reference

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Two families of chaperonin: physiology and mechanism

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3234217

20 June 2018

1 reference

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Markov propagation of allosteric effects in biomolecular systems: application to GroEL-GroES.

20 June 2018

1 reference

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The Oxygen Equilibrium of Hemoglobin and Its Structural Interpretation

20 June 2018

1 reference

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Allosteric signaling of ATP hydrolysis in GroEL-GroES complexes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3234217

Coarse-grained normal mode analysis in structural biology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3234217

Allosteric mechanisms of signal transduction

20 June 2018

1 reference

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Usefulness and limitations of normal mode analysis in modeling dynamics of biomolecular complexes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3234217

A mutant chaperonin with rearranged inter-ring electrostatic contacts and temperature-sensitive dissociation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3234217

The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data

20 June 2018

1 reference

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Teleonomic mechanisms in cellular metabolism, growth, and differentiation

20 June 2018

1 reference

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ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3234217

ATP-bound states of GroEL captured by cryo-electron microscopy

20 June 2018

1 reference

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A dynamic model for the allosteric mechanism of GroEL

20 June 2018

1 reference

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Decameric GTP cyclohydrolase I forms complexes with two pentameric GTP cyclohydrolase I feedback regulatory proteins in the presence of phenylalanine or of a combination of tetrahydrobiopterin and GTP

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3234217

GTP cyclohydrolase I feedback regulatory protein is a pentamer of identical subunits. Purification, cDNA cloning, and bacterial expression

20 June 2018

1 reference

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Control by phosphorylation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3234217

The effects of phosphorylation on the structure and function of proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3234217

Comparison of Experimental Binding Data and Theoretical Models in Proteins Containing Subunits*

20 June 2018

1 reference

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Ligand binding and internal equilibiums in proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3234217

Site-directed mutagenesis in Bacillus stearothermophilus fructose-6-phosphate 1-kinase. Mutation at the substrate-binding site affects allosteric behavior.

20 June 2018

1 reference

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Glycogen phosphorylase: control by phosphorylation and allosteric effectors

20 June 2018

1 reference

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Biochemistry. An ensemble view of allostery

20 June 2018

1 reference

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A geometry-based generic predictor for catalytic and allosteric sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002301

Exploring the structural dynamics of the E.coli chaperonin GroEL using translation-libration-screw crystallographic refinement of intermediate states

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002301

Distinct actions of cis and trans ATP within the double ring of the chaperonin GroEL.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002301

Sequential ATP-induced allosteric transitions of the cytoplasmic chaperonin containing TCP-1 revealed by EM analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002301

Coupling between global dynamics and signal transduction pathways: a mechanism of allostery for chaperonin GroEL.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002301

Analysis of domain motions by approximate normal mode calculations

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002301

Cooperativity in ATP hydrolysis by GroEL is increased by GroES

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22174669

12 December 2020

inferred from PubMed ID database lookup

GroEL-GroES cycling: ATP and nonnative polypeptide direct alternation of folding-active rings

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22174669

12 December 2020

inferred from PubMed ID database lookup

Characterization of the active intermediate of a GroEL-GroES-mediated protein folding reaction

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22174669

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1371/JOURNAL.PCBI.1002301

1 reference

journals/ploscb/MitternachtB11a

14 September 2017

1 reference

DBLP Dataset 2021-01-02

release_iqrpfuavmbawlpb42fztuacolm

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/iqrpfuavmbawlpb42fztuacolm

24 November 2022

mapped directly with Wikidata item

1 reference

14 September 2017

PubMed publication ID

22174669

1 reference