Energy exchange network of inter-residue interactions within a thermally fluctuating protein molecule: A computational study. (Q30376346)

21 June 2017

title

Energy exchange network of inter-residue interactions within a thermally fluctuating protein molecule: A computational study. (English)

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21 June 2017

main subject

computational biology

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Takakazu Ishikura

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21 June 2017

Yuki Iwata

series ordinal

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21 June 2017

Tatsuro Hatano

series ordinal

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21 June 2017

Takahisa Yamato

series ordinal

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21 June 2017

publication date

6 July 2015

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Journal of Computational Chemistry

21 June 2017

published in

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21 June 2017

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21 June 2017

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21 June 2017

page(s)

1709-1718

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Allo-network drugs: extension of the allosteric drug concept to protein- protein interaction and signaling networks

21 June 2017

cites work

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Network analysis of protein dynamics

21 January 2018

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Evolutionarily conserved networks of residues mediate allosteric communication in proteins

21 January 2018

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Determination of network of residues that regulate allostery in protein families using sequence analysis

21 January 2018

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Mechanical network in titin immunoglobulin from force distribution analysis

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Signaling pathways of PDZ2 domain: a molecular dynamics interaction correlation analysis

21 January 2018

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Exploring residue component contributions to dynamical network models of allostery

21 January 2018

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21 January 2018

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Simulating energy flow in biomolecules: application to tuna cytochrome c

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Heat flow in proteins: computation of thermal transport coefficients

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Vibrational energy relaxation in proteins

21 January 2018

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Intramolecular signaling pathways revealed by modeling anisotropic thermal diffusion

21 January 2018

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Vibrational energy flow in the villin headpiece subdomain: master equation simulations

21 January 2018

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Vibrational energy transport in peptide helices after excitation of C-D modes in Leu-d10.

21 January 2018

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Change in allosteric network affects binding affinities of PDZ domains: analysis through perturbation response scanning

21 January 2018

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Surface sites for engineering allosteric control in proteins

21 January 2018

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Mapping of two networks of residues that exhibit structural and dynamical changes upon binding in a PDZ domain protein

21 January 2018

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Comparison of simple potential functions for simulating liquid water

21 January 2018

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Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

21 January 2018

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Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

21 January 2018

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Langevin dynamics of peptides: the frictional dependence of isomerization rates of N-acetylalanyl-N'-methylamide

21 January 2018

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Statistical-Mechanical Theory of Irreversible Processes. I. General Theory and Simple Applications to Magnetic and Conduction Problems

21 January 2018

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Markoff Random Processes and the Statistical Mechanics of Time‐Dependent Phenomena. II. Irreversible Processes in Fluids

21 January 2018

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Adaptive Green-Kubo estimates of transport coefficients from molecular dynamics based on robust error analysis

21 January 2018

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Theoretical Studies of Protein Folding

21 January 2018

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Hidden dynamic allostery in a PDZ domain.

21 January 2018

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Phosphorylation of a PDZ domain extension modulates binding affinity and interdomain interactions in postsynaptic density-95 (PSD-95) protein, a membrane-associated guanylate kinase (MAGUK).

21 January 2018

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The spatial architecture of protein function and adaptation

21 January 2018

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Reassessing a sparse energetic network within a single protein domain

21 January 2018

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Evolutionarily conserved pathways of energetic connectivity in protein families

21 January 2018

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Low-frequency normal modes that describe allosteric transitions in biological nanomachines are robust to sequence variations

21 January 2018

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Molecular dynamics with coupling to an external bath

21 January 2018

1 reference

https://api.fatcat.wiki/v0/release/3mbjrewq4fdvtgu745zslswrwy

21 January 2018

Identifiers

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30 July 2022

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DBLP publication ID

journals/jcc/IshikuraIHY15

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DBLP Dataset 2021-01-02

release_3mbjrewq4fdvtgu745zslswrwy

28 January 2021

Fatcat ID

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Fatcat

https://api.fatcat.wiki/v0/release/3mbjrewq4fdvtgu745zslswrwy

mapped directly with Wikidata item

30 July 2022

based on heuristic

https://api.fatcat.wiki/v0/release/3mbjrewq4fdvtgu745zslswrwy

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