Molecular fragment replacement approach to protein structure determination by chemical shift and dipolar homology database mining. (Q30350473)

20 June 2017

title

Molecular fragment replacement approach to protein structure determination by chemical shift and dipolar homology database mining. (English)

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protein structure determination

20 June 2017

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Ad Bax

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20 June 2017

Georg Kontaxis

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20 June 2017

Frank Delaglio

series ordinal

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20 June 2017

language of work or name

English

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publication date

1 January 2005

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20 June 2017

published in

Methods in Enzymology

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20 June 2017

volume

394

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20 June 2017

page(s)

42-78

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Variation of molecular alignment as a means of resolving orientational ambiguities in protein structures from dipolar couplings

20 June 2017

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Protein backbone structure determination using only residual dipolar couplings from one ordering medium.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Elucidation of the poly-L-proline binding site in Acanthamoeba profilin I by NMR spectroscopy

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Characterization of surfactant liquid crystal phases suitable for molecular alignment and measurement of dipolar couplings

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Dipolar couplings in macromolecular structure determination

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Direct structure determination using residual dipolar couplings: reaction-site conformation of methionine sulfoxide reductase in solution

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

High-field orientation effects in the high-resolution proton NMR spectra of diverse porphyrins

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Rapid identification of medium- to large-scale interdomain motion in modular proteins using dipolar couplings

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Application of correlated residual dipolar couplings to the determination of the molecular alignment tensor magnitude of oriented proteins and nucleic acids

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

A simple apparatus for generating stretched polyacrylamide gels, yielding uniform alignment of proteins and detergent micelles

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Solution structure of Ca(2+)-calmodulin reveals flexible hand-like properties of its domains

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Accurate and rapid docking of protein-protein complexes on the basis of intermolecular nuclear overhauser enhancement data and dipolar couplings by rigid body minimization

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Theoretical and computational advances in biomolecular NMR spectroscopy

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Docking of protein-protein complexes on the basis of highly ambiguous intermolecular distance restraints derived from 1H/15N chemical shift mapping and backbone 15N-1H residual dipolar couplings using conjoined rigid body/torsion angle dynamics.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Assignment of the side-chain proton and carbon-13 resonances of interleukin-1.beta. using double- and triple-resonance heteronuclear three-dimensional NMR spectroscopy

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

A robust method for determining the magnitude of the fully asymmetric alignment tensor of oriented macromolecules in the absence of structural information

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Validation of Protein Structure from Anisotropic Carbonyl Chemical Shifts in a Dilute Liquid Crystalline Phase

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Protein backbone angle restraints from searching a database for chemical shift and sequence homology

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

The third IgG-binding domain from streptococcal protein G. An analysis by X-ray crystallography of the structure alone and in a complex with Fab

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Have we seen all structures corresponding to short protein fragments in the Protein Data Bank? An update

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Conformational analysis of the backbone-dependent rotamer preferences of protein sidechains

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

X-ray structures of isoforms of the actin-binding protein profilin that differ in their affinity for phosphatidylinositol phosphates

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Cellulose Crystallites: A New and Robust Liquid Crystalline Medium for the Measurement of Residual Dipolar Couplings

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Determination of protein global folds using backbone residual dipolar coupling and long-range NOE restraints.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Tunable alignment of macromolecules by filamentous phage yields dipolar coupling interactions

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

De novo determination of protein structure by NMR using orientational and long-range order restraints

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Controlling residual dipolar couplings in high-resolution NMR of proteins by strain induced alignment in a gel.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Improved methods for building protein models in electron density maps and the location of errors in these models

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

MOLMOL: a program for display and analysis of macromolecular structures

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Determination of three-dimensional protein structures from nuclear magnetic resonance data using fragments of known structures

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Magnetic alignment of duplex and quadruplex DNAs

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Improvements and Extensions in the Conformational Database Potential for the Refinement of NMR and X-ray Structures of Proteins and Nucleic Acids

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Order matrix analysis of residual dipolar couplings using singular value decomposition.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Structure of HCV IRES domain II determined by NMR

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

NMR structural studies of membrane proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Charged acrylamide copolymer gels as media for weak alignment.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

A new approach for applying residual dipolar couplings as restraints in structure elucidation.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Raster3D Version 2.0. A program for photorealistic molecular graphics

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

A method for incorporating dipolar couplings into structure calculations in cases of (near) axial symmetry of alignment

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

The closed state of a H+ channel helical bundle combining precise orientational and distance restraints from solid state NMR

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Ionization equilibria for side-chain carboxyl groups in oxidized and reduced human thioredoxin and in the complex with its target peptide from the transcription factor NF kappa B.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Solution structure of DinI provides insight into its mode of RecA inactivation

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

De novo determination of protein backbone structure from residual dipolar couplings using Rosetta

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Solution NMR of proteins within polyacrylamide gels: diffusional properties and residual alignment by mechanical stress or embedding of oriented purple membranes

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Internal coordinates for molecular dynamics and minimization in structure determination and refinement.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

The Xplor-NIH NMR molecular structure determination package

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Direct Measurement of Distances and Angles in Biomolecules by NMR in a Dilute Liquid Crystalline Medium

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Magnetic Field Dependence of Nitrogen−ProtonJSplittings in15N-Enriched Human Ubiquitin Resulting from Relaxation Interference and Residual Dipolar Coupling

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Use of dipolar 1H–15N and 1H–13C couplings in the structure determination of magnetically oriented macromolecules in solution

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Nuclear magnetic dipole interactions in field-oriented proteins: information for structure determination in solution

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Alignment of Biopolymers in Strained Gels: A New Way To Create Detectable Dipole−Dipole Couplings in High-Resolution Biomolecular NMR

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Evaluation of backbone proton positions and dynamics in a small protein by liquid crystal NMR spectroscopy

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Functional implications of interleukin-1 beta based on the three-dimensional structure

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Structure of ubiquitin refined at 1.8 A resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Three-dimensional solution structure of Acanthamoeba profilin-I

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Internal dynamics of human ubiquitin revealed by 13C-relaxation studies of randomly fractionally labeled protein

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Crystal structures of reduced, oxidized, and mutated human thioredoxins: evidence for a regulatory homodimer

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Single-Step Determination of Protein Substructures Using Dipolar Couplings: Aid to Structural Genomics

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Evaluation of uncertainty in alignment tensors obtained from dipolar couplings

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

Prediction of charge-induced molecular alignment of biomolecules dissolved in dilute liquid-crystalline phases

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2994003-2

7 January 2021

10.1016/S0076-6879(05)94003-2

Identifiers

DOI

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release_w6hlwiq4z5cqbbgjypy3fsx64u

20 June 2017

Fatcat ID

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https://api.fatcat.wiki/v0/release/w6hlwiq4z5cqbbgjypy3fsx64u

24 November 2022

mapped directly with Wikidata item

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