Sensitivity and selectivity in protein structure comparison (Q30312119)

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English	Sensitivity and selectivity in protein structure comparison	scientific article

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instance of

scholarly article

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stated in

Europe PubMed Central

PMC publication ID

2286722

retrieved

14 August 2017

title

Sensitivity and selectivity in protein structure comparison (English)

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stated in

Europe PubMed Central

PMC publication ID

2286722

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14 August 2017

author

William Raymond Pearson

object named as

William R Pearson

series ordinal

2

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Michael Sierk

object named as

Michael L Sierk

series ordinal

1

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language of work or name

English

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based on heuristic

inferred from title

publication date

1 March 2004

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stated in

Europe PubMed Central

PMC publication ID

2286722

retrieved

14 August 2017

published in

Protein Science

1 reference

stated in

Europe PubMed Central

PMC publication ID

2286722

retrieved

14 August 2017

volume

13

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stated in

Europe PubMed Central

PMC publication ID

2286722

retrieved

14 August 2017

issue

3

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stated in

Europe PubMed Central

PMC publication ID

2286722

retrieved

14 August 2017

page(s)

773-785

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stated in

Europe PubMed Central

PMC publication ID

2286722

retrieved

14 August 2017

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3 June 2018

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A normalized root-mean-square distance for comparing protein three-dimensional structures

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DaliLite workbench for protein structure comparison

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Protein structure comparison using the markov transition model of evolution.

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Comparative protein structure modeling of genes and genomes

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Expectations from structural genomics

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3 June 2018

The Protein Data Bank

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Identification of homologous core structures.

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3 June 2018

Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods

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Protein structure alignment by incremental combinatorial extension (CE) of the optimal path

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3 June 2018

Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships

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PubMed Central

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3 June 2018

A unified statistical framework for sequence comparison and structure comparison

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3 June 2018

Empirical statistical estimates for sequence similarity searches.

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Touring protein fold space with Dali/FSSP

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3 June 2018

CATH--a hierarchic classification of protein domain structures

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3 June 2018

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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PubMed Central

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3 June 2018

Surprising similarities in structure comparison

1 reference

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PubMed Central

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3 June 2018

Local alignment statistics

1 reference

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2286722

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3 June 2018

Threading a database of protein cores

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2286722

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3 June 2018

Mapping the protein universe

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PubMed Central

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3 June 2018

SCOP: a structural classification of proteins database for the investigation of sequences and structures

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PubMed Central

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3 June 2018

Comparison of methods for searching protein sequence databases.

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PubMed Central

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3 June 2018

Identification of common molecular subsequences

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2286722

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3 June 2018

Improved tools for biological sequence comparison

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2286722

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3 June 2018

Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes

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PubMed Central

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3 June 2018

Local protein sequence similarity does not imply a structural relationship

1 reference

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PubMed Central

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3 June 2018

Searching protein sequence libraries: Comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2286722

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3 June 2018

Maximum-likelihood estimation of the statistical distribution of Smith-Waterman local sequence similarity scores

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2286722

retrieved

26 November 2018

Use of receiver operating characteristic (ROC) analysis to evaluate sequence matching

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2286722

retrieved

26 November 2018

Protein fold similarity estimated by a probabilistic approach based on C(alpha)-C(alpha) distance comparison.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2286722

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26 November 2018

Completeness in structural genomics.

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2286722

retrieved

26 November 2018

Structure comparison and structure patterns

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2286722

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26 November 2018

Recognition of analogous and homologous protein folds: analysis of sequence and structure conservation 1 1Edited by F. E. Cohen

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2286722

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26 November 2018

Motif identification neural design for rapid and sensitive protein family search.

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2286722

retrieved

26 November 2018

Identifiers

DOI

10.1110/PS.03328504

1 reference

stated in

Europe PubMed Central

PMC publication ID

2286722

retrieved

14 August 2017

PMC publication ID

2286722

1 reference

stated in

Europe PubMed Central

PMC publication ID

2286722

retrieved

14 August 2017

PubMed publication ID

14978311

1 reference

stated in

Europe PubMed Central

PMC publication ID

2286722

retrieved

14 August 2017

ResearchGate publication ID

5467135

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