A machine learning classifier trained on cancer transcriptomes detects NF1 inactivation signal in glioblastoma (Q30274830)

21 August 2017

A machine learning classifier trained on cancer transcriptomes detects NF1 inactivation signal in glioblastoma (English)

1 reference

21 August 2017

1 reference

0 references

1 reference

Gregory P Way

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Robert J Allaway

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Casey S Greene

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Stephanie J Bouley

1 reference

21 August 2017

Camilo E Fadul

series ordinal

1 reference

21 August 2017

Yolanda Sanchez

series ordinal

1 reference

21 August 2017

language of work or name

English

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publication date

6 February 2017

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21 August 2017

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21 August 2017

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21 August 2017

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21 August 2017

127

1 reference

describes a project that uses

21 August 2017

WGCNA

object named as

R package WGCNA

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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Origin of the U87MG glioma cell line: Good news and bad news

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A Crowdsourcing Approach to Developing and Assessing Prediction Algorithms for AML Prognosis

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Genomic characterization of patient-derived xenograft models established from fine needle aspirate biopsies of a primary pancreatic ductal adenocarcinoma and from patient-matched metastatic sites

3 June 2018

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Neurofibromatosis type 1: Fundamental insights into cell signalling and cancer.

3 June 2018

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Cross-platform normalization of microarray and RNA-seq data for machine learning applications

3 June 2018

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The Placental Gene PEG10 Promotes Progression of Neuroendocrine Prostate Cancer

3 June 2018

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A RASopathy gene commonly mutated in cancer: the neurofibromatosis type 1 tumour suppressor

3 June 2018

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Analysis of strand-specific RNA-seq data using machine learning reveals the structures of transcription units in Clostridium thermocellum

3 June 2018

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CSIG promotes hepatocellular carcinoma proliferation by activating c-MYC expression

3 June 2018

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Gene Ontology Consortium: going forward

3 June 2018

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PEG10 plays a crucial role in human lung cancer proliferation, progression, prognosis and metastasis

3 June 2018

1 reference

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Combining affinity proteomics and network context to identify new phosphatase substrates and adapters in growth pathways.

3 June 2018

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Stem cell characteristics in glioblastoma are maintained by the ecto-nucleotidase E-NPP1.

3 June 2018

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A machine learned classifier that uses gene expression data to accurately predict estrogen receptor status

3 June 2018

1 reference

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Modeling RAS phenotype in colorectal cancer uncovers novel molecular traits of RAS dependency and improves prediction of response to targeted agents in patients

3 June 2018

1 reference

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The somatic genomic landscape of glioblastoma

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5292791

Facial plexiform neurofibromatosis: A surgical challenge

3 June 2018

1 reference

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A new statistic for identifying batch effects in high-throughput genomic data that uses guided principal component analysis

3 June 2018

1 reference

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Sparse logistic regression with a L1/2 penalty for gene selection in cancer classification

3 June 2018

1 reference

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HMGA2 is a driver of tumor metastasis.

3 June 2018

1 reference

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Identifying the Ubiquitin Ligase complex that regulates the NF1 tumor suppressor and Ras.

3 June 2018

1 reference

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The CREB-miR-9 negative feedback minicircuitry coordinates the migration and proliferation of glioma cells

3 June 2018

1 reference

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The ConsensusPathDB interaction database: 2013 update

3 June 2018

1 reference

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ISPD loss-of-function mutations disrupt dystroglycan O-mannosylation and cause Walker-Warburg syndrome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5292791

Strategies for aggregating gene expression data: the collapseRows R function

3 June 2018

1 reference

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Discovery of a small molecule targeting IRA2 deletion in budding yeast and neurofibromin loss in malignant peripheral nerve sheath tumor cells

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5292791

Lactic acidosis triggers starvation response with paradoxical induction of TXNIP through MondoA

3 June 2018

1 reference

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A framework for oligonucleotide microarray preprocessing.

3 June 2018

1 reference

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A genome-wide RNA interference screen reveals an essential CREB3L2-ATF5-MCL1 survival pathway in malignant glioma with therapeutic implications

3 June 2018

1 reference

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Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5292791

Genome-wide transcriptome analyses reveal p53 inactivation mediated loss of miR-34a expression in malignant peripheral nerve sheath tumours

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5292791

Proteasomal and genetic inactivation of the NF1 tumor suppressor in gliomagenesis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5292791

Transcriptional switch of dormant tumors to fast-growing angiogenic phenotype

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5292791

The transcription factor ATF5: role in neurodevelopment and neural tumors

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5292791

ConsensusPathDB--a database for integrating human functional interaction networks

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5292791

A comparative study of different machine learning methods on microarray gene expression data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5292791

The loss of Nf1 transiently promotes self-renewal but not tumorigenesis by neural crest stem cells

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5292791

Neurofibromatosis-1 (Nf1) heterozygous brain microglia elaborate paracrine factors that promote Nf1-deficient astrocyte and glioma growth.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5292791

AceView: a comprehensive cDNA-supported gene and transcripts annotation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5292791

PEG10 is a c-MYC target gene in cancer cells

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5292791

Summaries of Affymetrix GeneChip probe level data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5292791

Malignant peripheral nerve sheath tumours in neurofibromatosis 1

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5292791

Ablation of NF1 function in neurons induces abnormal development of cerebral cortex and reactive gliosis in the brain

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5292791

NF1 tumor suppressor gene function: narrowing the GAP

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5292791

Gene ontology: tool for the unification of biology

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5292791

The neurofibromatosis type I messenger RNA undergoes base-modification RNA editing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5292791

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5292791

The neurofibromatosis type 1 gene encodes a protein related to GAP

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5292791

A de novo Alu insertion results in neurofibromatosis type 1

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5292791

3 June 2018

Neurofibromatosis type 1

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12864-017-3519-7

Gene-targeted deletion of neurofibromin enhances the expression of a transient outward K+ current in Schwann cells: a protein kinase A-mediated mechanism.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5292791

Identification of potential gene markers and insights into the pathophysiology of pheochromocytoma malignancy

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28166733

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S12864-017-3519-7

1 reference

Dimensions Publication ID

21 August 2017

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/s12864-017-3519-7

1 reference

21 August 2017

PubMed publication ID

28166733

1 reference