Secondary structure is required for 3' splice site recognition in yeast (Q39826068)

15 September 2017

Secondary structure is required for 3' splice site recognition in yeast (English)

1 reference

15 September 2017

Anna Valentová

0 references

Ondřej Gahura

0 references

František Půta

0 references

Petr Folk

0 references

Ondřej Gahura

1 reference

15 September 2017

Christian Hammann

series ordinal

1 reference

15 September 2017

Anna Valentová

series ordinal

1 reference

15 September 2017

František Půta

series ordinal

1 reference

15 September 2017

5 September 2011

1 reference

15 September 2017

Nucleic Acids Research

1 reference

15 September 2017

1 reference

15 September 2017

1 reference

15 September 2017

9759-9767

1 reference

Creative Commons Attribution-NonCommercial 3.0 Unported

15 September 2017

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyrighted

0 references

cites work

Four exons of the serotonin receptor 4 gene are associated with multiple distant branch points

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Role of RNA structure in regulating pre-mRNA splicing

22 September 2017

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Mechanisms of alternative splicing regulation: insights from molecular and genomics approaches

22 September 2017

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The spliceosome: design principles of a dynamic RNP machine

22 September 2017

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Riboswitches: ancient and promising genetic regulators

22 September 2017

1 reference

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Evolutionary convergence on highly-conserved 3' intron structures in intron-poor eukaryotes and insights into the ancestral eukaryotic genome

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3239191

Correlation between the secondary structure of pre-mRNA introns and the efficiency of splicing in Saccharomyces cerevisiae.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3239191

L30 binds the nascent RPL30 transcript to repress U2 snRNP recruitment

22 September 2017

1 reference

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22 September 2017

The Vienna RNA websuite

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In-line probing analysis of riboswitches

22 September 2017

1 reference

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The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data

22 September 2017

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Yeast genome evolution--the origin of the species

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3239191

Modulating role of RNA structure in alternative splicing of a critical exon in the spinal muscular atrophy genes.

22 September 2017

1 reference

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Complex spliceosomal organization ancestral to extant eukaryotes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3239191

Influence of RNA secondary structure on the pre-mRNA splicing process

22 September 2017

1 reference

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Mfold web server for nucleic acid folding and hybridization prediction

22 September 2017

1 reference

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Intron self-complementarity enforces exon inclusion in a yeast pre-mRNA

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3239191

Mutational analysis of pre-mRNA splicing in Saccharomyces cerevisiae using a sensitive new reporter gene, CUP1

22 September 2017

1 reference

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Scanning and competition between AGs are involved in 3' splice site selection in mammalian introns

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3239191

Formation of the yeast splicing complex A1 and association of the splicing factor PRP19 with the pre-mRNA are independent of the 3' region of the intron

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3239191

Exon recognition in vertebrate splicing

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3239191

RNA structural patterns and splicing: molecular basis for an RNA-based enhancer.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3239191

Secondary structure of splice sites in adenovirus mRNA precursors

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3239191

Yeast pre-messenger RNA splicing efficiency depends on critical spacing requirements between the branch point and 3' splice site

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3239191

Exon definition may facilitate splice site selection in RNAs with multiple exons

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3239191

Functional recognition of the 3' splice site AG by the splicing factor U2AF35.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3239191

Modulation of alternative splicing by long-range RNA structures in Drosophila

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3239191

The role of branchpoint-3' splice site spacing and interaction between intron terminal nucleotides in 3' splice site selection in Saccharomyces cerevisiae

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3239191

Intramolecular structure in yeast introns aids the early steps of in vitro spliceosome assembly.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3239191

Alternative splicing caused by RNA secondary structure.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3239191

Unexpected point mutations activate cryptic 3' splice sites by perturbing a natural secondary structure within a yeast intron

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3239191

A U-rich tract enhances usage of an alternative 3′ splice site in yeast

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3239191

A class of human exons with predicted distant branch points revealed by analysis of AG dinucleotide exclusion zones

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3239191

RNAshapes: an integrated RNA analysis package based on abstract shapes.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3239191

Bimolecular exon ligation by the human spliceosome bypasses early 3' splice site AG recognition and requires NTP hydrolysis

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3239191

Crosslinking of the U5 snRNP-specific 116-kDa protein to RNA hairpins that block step 2 of splicing

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3239191

Diffusion mechanisms in metallic supercooled liquids and glasses

20 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKR662

A novel role for the 3' region of introns in pre-mRNA splicing of Saccharomyces cerevisiae

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21893588

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKR662

1 reference

15 September 2017

1 reference

15 September 2017

PubMed publication ID

21893588

1 reference