ORFeus: Detection of distant homology using sequence profiles and predicted secondary structure (Q39804059)

14 September 2017

ORFeus: Detection of distant homology using sequence profiles and predicted secondary structure (English)

1 reference

14 September 2017

Janusz M Bujnicki

1 reference

14 September 2017

Leszek Rychlewski

1 reference

14 September 2017

Krzysztof Ginalski

1 reference

14 September 2017

Marcin von Grotthuss

1 reference

14 September 2017

Lucjan S Wyrwicz

1 reference

14 September 2017

Jakub Pas

1 reference

PMC publication ID

168911

14 September 2017

language of work or name

English

0 references

publication date

1 July 2003

1 reference

14 September 2017

Nucleic Acids Research

1 reference

14 September 2017

1 reference

14 September 2017

1 reference

14 September 2017

3804-3807

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=168911

14 September 2017

1 reference

LiveBench-2: large-scale automated evaluation of protein structure prediction servers.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=168911

CAFASP2: the second critical assessment of fully automated structure prediction methods

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=168911

ToolShop: prerelease inspections for protein structure prediction servers.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=168911

Pcons: a neural-network-based consensus predictor that improves fold recognition.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=168911

Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=168911

FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=168911

LiveBench-1: continuous benchmarking of protein structure prediction servers

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=168911

Enhanced genome annotation using structural profiles in the program 3D-PSSM

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=168911

SCOP: a structural classification of proteins database

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=168911

Protein secondary structure prediction based on position-specific scoring matrices

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=168911

Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=168911

GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=168911

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=168911

Comparison of sequence profiles. Strategies for structural predictions using sequence information

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=168911

Within the twilight zone: a sensitive profile-profile comparison tool based on information theory.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=168911

Hybrid fold recognition: combining sequence derived properties with evolutionary information.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=168911

3D‐SHOTGUN: A novel, cooperative, fold‐recognition meta‐predictor

20 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12824423

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKG504

1 reference

journals/nar/GinalskiPWGBR03

14 September 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

PMC publication ID

168911

14 September 2017

PubMed publication ID

12824423

1 reference

PMC publication ID

168911