Integration of related sequences with protein three-dimensional structural families in an updated version of PALI database. (Q39790424)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12520058%20AND%20SRC:MED&resulttype=core&format=json

16 December 2019

title

Integration of related sequences with protein three-dimensional structural families in an updated version of PALI database (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12520058%20AND%20SRC:MED&resulttype=core&format=json

16 December 2019

0 references

Shashi Bhushan Pandit

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12520058%20AND%20SRC:MED&resulttype=core&format=json

16 December 2019

V S Gowri

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12520058%20AND%20SRC:MED&resulttype=core&format=json

16 December 2019

P S Karthik

1 reference

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16 December 2019

N Srinivasan

1 reference

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16 December 2019

S Balaji

1 reference

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16 December 2019

language of work or name

English

0 references

publication date

1 January 2003

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12520058%20AND%20SRC:MED&resulttype=core&format=json

16 December 2019

published in

Nucleic Acids Research

1 reference

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16 December 2019

volume

1 reference

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16 December 2019

issue

1 reference

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16 December 2019

page(s)

486-488

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12520058%20AND%20SRC:MED&resulttype=core&format=json

SUPFAM--a database of potential protein superfamily relationships derived by comparing sequence-based and structure-based families: implications for structural genomics and function annotation in genomes

16 December 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165510

PALI-a database of Phylogeny and ALIgnment of homologous protein structures

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165510

IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165510

The Pfam protein families database.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165510

22 September 2017

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165510

A unified statistical framework for sequence comparison and structure comparison

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165510

Pfam: multiple sequence alignments and HMM-profiles of protein domains

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165510

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165510

Comparison of conformational characteristics in structurally similar protein pairs

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165510

SCOP: a structural classification of proteins database for the investigation of sequences and structures

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165510

RASMOL: biomolecular graphics for all

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165510

The relation between the divergence of sequence and structure in proteins

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165510

Multiple protein sequence alignment from tertiary structure comparison: assignment of global and residue confidence levels

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165510

PALI: a database of alignments and phylogeny of homologous protein structures

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165510

Use of a database of structural alignments and phylogenetic trees in investigating the relationship between sequence and structural variability among homologous proteins

20 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12520058

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Molecular anatomy: phyletic relationships derived from three-dimensional structures of proteins

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12520058

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKG063

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12520058%20AND%20SRC:MED&resulttype=core&format=json

16 December 2019

DBLP publication ID

journals/nar/GowriPKSB03

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12520058%20AND%20SRC:MED&resulttype=core&format=json

16 December 2019

PubMed publication ID

12520058

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12520058%20AND%20SRC:MED&resulttype=core&format=json