Benefits of a Recombination-Proficient Escherichia coli System for Adaptive Laboratory Evolution (Q39404926)

11 September 2017

Benefits of a Recombination-Proficient Escherichia coli System for Adaptive Laboratory Evolution (English)

1 reference

11 September 2017

1 reference

George Peabody

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11 September 2017

James Winkler

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11 September 2017

Weston Fountain

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11 September 2017

David A Castro

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11 September 2017

Enzo Leiva-Aravena

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11 September 2017

Katy C Kao

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11 September 2017

language of work or name

English

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publication date

9 September 2016

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Applied and Environmental Microbiology

11 September 2017

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11 September 2017

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11 September 2017

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11 September 2017

6736-6747

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Evolvability of an Optimal Recombination Rate

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

Recent advances in the evolutionary engineering of industrial biocatalysts

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

Recombination accelerates adaptation on a large-scale empirical fitness landscape in HIV-1

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

Horizontal gene transfer can rescue prokaryotes from Muller's ratchet: benefit of DNA from dead cells and population subdivision

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

The effect of population bottlenecks on mutation rate evolution in asexual populations

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

The effect of bacterial recombination on adaptation on fitness landscapes with limited peak accessibility

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

Fluctuation analysis CalculatOR: a web tool for the determination of mutation rate using Luria-Delbruck fluctuation analysis

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

High-throughput, quantitative analyses of genetic interactions in E. coli

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

Surviving the bottleneck: transmission mutants and the evolution of microbial populations.

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

Genome shuffling to improve thermotolerance, ethanol tolerance and ethanol productivity of Saccharomyces cerevisiae

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

Recombination speeds adaptation by reducing competition between beneficial mutations in populations of Escherichia coli

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

The mutational load with epistatic gene interactions in fitness

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

Sex Compatibility in Escherichia Coli

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

Interference among deleterious mutations favours sex and recombination in finite populations

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

Adaptation in sexuals vs. asexuals: clonal interference and the Fisher-Muller model

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

THE RELATION OF RECOMBINATION TO MUTATIONAL ADVANCE

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

Genetic analysis of a "double male" strain of Escherichia coli K-12.

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

Sex releases the speed limit on evolution

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

Genome shuffling leads to rapid phenotypic improvement in bacteria

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

The crystal structure of DNA mismatch repair protein MutS binding to a G x T mismatch

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

Improvement of microbial strains and fermentation processes

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

Fluctuation analysis of mutations to nalidixic acid resistance in Escherichia coli.

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

Escherichia coli K-12 clones that overproduce dam methylase are hypermutable.

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

Conjugal transfer of bacterial chromosomes mediated by the RK2 plasmid transfer origin cloned into transposon Tn5

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

Deletion analysis of the F plasmid oriT locus

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

Conjugational recombination in E. coli: myths and mechanisms

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

Survival probability of beneficial mutations in bacterial batch culture

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

Low copy number plasmids for regulated low-level expression of cloned genes in Escherichia coli with blue/white insert screening capability

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

Sex speeds adaptation by altering the dynamics of molecular evolution.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

Factors affecting the kinetics of progeny formation with F′lac in Escherichia coli K12

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

MutS/MutL crystal structure reveals that the MutS sliding clamp loads MutL onto DNA.

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

Sex slows down the accumulation of deleterious mutations in the homothallic fungus Aspergillus nidulans

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

On the speed of Muller's ratchet.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

Estimate of the genomic mutation rate deleterious to overall fitness in E. coli

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

Novel regulatory mutants of the phosphate regulon in Escherichia coli K-12.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

Exploring the effect of sex on empirical fitness landscapes

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

Novel methods of genome shuffling in Saccharomyces cerevisiae

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

Evolution of recombination due to random drift

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

Harnessing recombination to speed adaptive evolution in Escherichia coli

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

Visualizing evolution in real time to determine the molecular mechanisms of n-butanol tolerance in Escherichia coli

4 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

Genome shuffling of Lactobacillus for improved acid tolerance

4 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5086567

Motility, diffusion and cell concentration affect pair formation in Escherichia coli

4 November 2018

1 reference

12 December 2020

Mutational meltdown in laboratory yeast populations

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12 December 2020

The probability that beneficial mutations are lost in populations with periodic bottlenecks

1 reference

12 December 2020

Adaptive evolution of asexual populations under Muller's ratchet

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12 December 2020

MULLER'S RATCHET AND MUTATIONAL MELTDOWNS

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12 December 2020

Mutational Meltdowns in Sexual Populations

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12 December 2020

High frequency mobilization of gram-negative bacterial replicons by the in vitro constructed Tn5-Mob transposon

1 reference

12 December 2020

Sexual recombination under the joint effects of mutation, selection, and random sampling drift

1 reference

12 December 2020

Conjugation in gram-positive bacteria and kinetics of plasmid transfer

1 reference

12 December 2020

Identifiers

DOI

10.1128/AEM.01850-16

1 reference

11 September 2017

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11 September 2017

PubMed publication ID

27613685

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