VSEARCH: a versatile open source tool for metagenomics (Q39249686)

10 September 2017

VSEARCH: a versatile open source tool for metagenomics (English)

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10 September 2017

0 references

1 reference

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27781170%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27781170%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27781170%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

Ben Nichols

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27781170%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

Tomáš Flouri

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27781170%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

publication date

18 October 2016

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10 September 2017

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3 June 2020

volume

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3 June 2020

page(s)

e2584

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Creative Commons Attribution 4.0 International

3 June 2020

start time

18 October 2016

1 reference

April 2022 Public Data File from Crossref

copyrighted

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cites work

Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697

Planetary boundaries: Guiding human development on a changing planet

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697

Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697

The Earth Microbiome project: successes and aspirations

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697

Patterns of rare and abundant marine microbial eukaryotes

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697

PEAR: a fast and accurate Illumina Paired-End reAd mergeR.

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697

New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697

UPARSE: highly accurate OTU sequences from microbial amplicon reads

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

10 September 2017

1 reference

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Rfam 11.0: 10 years of RNA families

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697

Structure, function and diversity of the healthy human microbiome

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697

PANDAseq: paired-end assembler for illumina sequences

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697

A holistic approach to marine eco-systems biology

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697

UCHIME improves sensitivity and speed of chimera detection

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697

Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697

Search and clustering orders of magnitude faster than BLAST

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697

QIIME allows analysis of high-throughput community sequencing data

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697

ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697

A safe operating space for humanity

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697

Fast and accurate short read alignment with Burrows-Wheeler transform

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697

Efficient methods for multiple sequence alignment with guaranteed error bounds

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697

A general method applicable to the search for similarities in the amino acid sequence of two proteins

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697

Optimal alignments in linear space

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697

Error filtering, pair assembly and error correction for next-generation sequencing reads

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697

Swarm: robust and fast clustering method for amplicon-based studies

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697

De novo clustering methods outperform reference-based methods for assigning 16S rRNA gene sequences to operational taxonomic units

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697

Application of a Database-Independent Approach To Assess the Quality of Operational Taxonomic Unit Picking Methods

21 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27781170

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.7717/PEERJ.2584

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27781170%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27781170%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

PubMed publication ID

27781170

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27781170%20AND%20SRC:MED&resulttype=core&format=json