Characterization of a genetically heterogeneous porcine rotavirus C, and other viruses present in the fecal virome of a non-diarrheic Belgian piglet (Q38866731)

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scientific article published on 13 May 2016

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English	Characterization of a genetically heterogeneous porcine rotavirus C, and other viruses present in the fecal virome of a non-diarrheic Belgian piglet	scientific article published on 13 May 2016

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

7 September 2017

Characterization of a genetically heterogeneous porcine rotavirus C, and other viruses present in the fecal virome of a non-diarrheic Belgian piglet (English)

1 reference

Europe PubMed Central

PubMed publication ID

7 September 2017

0 references

object named as

rotavirus C

1 reference

based on heuristic

inferred from title

1 reference

based on heuristic

inferred from title

Nádia Conceição-Neto

2

object named as

Nádia Conceição-Neto

0 references

Jelle Matthijnssens

object named as

Jelle Matthijnssens

9

0 references

object named as

Marc Van Ranst

7

0 references

Hans J Nauwynck

8

object named as

Hans J Nauwynck

1 reference

Europe PubMed Central

PubMed publication ID

7 September 2017

author name string

Sebastiaan Theuns

1

1 reference

Europe PubMed Central

PubMed publication ID

7 September 2017

Mark Zeller

3

1 reference

Europe PubMed Central

PubMed publication ID

7 September 2017

Elisabeth Heylen

4

1 reference

Europe PubMed Central

PubMed publication ID

7 September 2017

Inge D M Roukaerts

5

1 reference

Europe PubMed Central

PubMed publication ID

7 September 2017

Lowiese M B Desmarets

6

1 reference

Europe PubMed Central

PubMed publication ID

7 September 2017

publication date

13 May 2016

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Europe PubMed Central

PubMed publication ID

7 September 2017

Infection, Genetics and Evolution

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Europe PubMed Central

PubMed publication ID

7 September 2017

43

1 reference

Europe PubMed Central

PubMed publication ID

7 September 2017

135-145

1 reference

Europe PubMed Central

PubMed publication ID

7 September 2017

Genetic diversity of porcine group A rotavirus strains in the UK.

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

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Porcine pararotavirus: detection, differentiation from rotavirus, and pathogenesis in gnotobiotic pigs

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Prevalence and characterization of enteric adenoviruses in the South of Ireland

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

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Detection and genetic diversity of porcine group A rotaviruses in historic (2004) and recent (2011 and 2012) swine fecal samples in Ohio: predominance of the G9P[13] genotype in nursing piglets

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

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Sequence analysis of the VP7 and VP4 genes identifies a novel VP7 gene allele of porcine rotaviruses, sharing a common evolutionary origin with human G2 rotaviruses

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

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Neurotropic astrovirus in cattle with nonsuppurative encephalitis in Europe

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification, phylogenetic analysis and classification of porcine group C rotavirus VP7 sequences from the United States and Canada

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

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Differential accessibility of a rotavirus VP6 epitope in trimers comprising type I, II, or III channels as revealed by binding of a human rotavirus VP6-specific antibody

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phylogenetic characterization of VP6 gene (inner capsid) of porcine rotavirus C collected in Japan

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

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Identification and characterization of novel porcine astroviruses (PAstVs) with high prevalence and frequent co-infection of individual pigs with multiple PAstV types.

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

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Serum antibody responses to individual viral polypeptides in human rotavirus infections

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Full genome-based classification of rotaviruses reveals a common origin between human Wa-Like and porcine rotavirus strains and human DS-1-like and bovine rotavirus strains

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Porcine group A rotaviruses with heterogeneous VP7 and VP4 genotype combinations can be found together with enteric bacteria on Belgian swine farms

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Modular approach to customise sample preparation procedures for viral metagenomics: a reproducible protocol for virome analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

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Surveillance of Human Astrovirus Infection in Brazil: The First Report of MLB1 Astrovirus

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

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Zoonotic aspects of rotaviruses

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Full genomic analysis and possible origin of a porcine G12 rotavirus strain RU172.

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rotavirus-Like, Calicivirus-Like, and 23-nm Virus-Like Particles Associated with Diarrhea in Young Pigs

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Reassortment of human rotavirus gene segments into G11 rotavirus strains

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expanding diversity of glycan receptor usage by rotaviruses.

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rapid detection and high occurrence of porcine rotavirus A, B, and C by RT-qPCR in diagnostic samples

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Trimmomatic: a flexible trimmer for Illumina sequence data

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evidence of serologic diversity within group C rotaviruses

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Spike protein VP8* of human rotavirus recognizes histo-blood group antigens in a type-specific manner

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Whole-genome characterization of human group C rotaviruses: identification of two lineages in the VP3 gene

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of a second encephalitis-associated astrovirus in cattle

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Uniformity of rotavirus strain nomenclature proposed by the Rotavirus Classification Working Group (RCWG)

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Complete genome characterization of recent and ancient Belgian pig group A rotaviruses and assessment of their evolutionary relationship with human rotaviruses

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of an avian group A rotavirus containing a novel VP4 gene with a close relationship to those of mammalian rotaviruses

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Whole-genomic analysis of G3P[23], G9P[23] and G3P[13] rotavirus strains isolated from piglets with diarrhea in Thailand, 2006-2008.

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Full-length genomic analysis of porcine rotavirus strains isolated from pigs with diarrhea in Northern Italy

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Detection and characterization of group C rotaviruses in asymptomatic piglets in Ireland

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Group A human rotavirus genomics: evidence that gene constellations are influenced by viral protein interactions

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MLB1 astrovirus in children with gastroenteritis, Italy

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Simultaneous identification of DNA and RNA viruses present in pig faeces using process-controlled deep sequencing

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Full-length genomic analysis of porcine G9P[23] and G9P[7] rotavirus strains isolated from pigs with diarrhea in South Korea.

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genetic diversity of the VP7, VP4 and VP6 genes of Korean porcine group C rotaviruses.

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Divergent astrovirus associated with neurologic disease in cattle

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Presence and characterization of pig group A and C rotaviruses in feces of Belgian diarrheic suckling piglets

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The fecal virome of pigs on a high-density farm.

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The general composition of the faecal virome of pigs depends on age, but not on feeding with a probiotic bacterium

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Whole-genome analysis of bovine rotavirus species C isolates obtained in Yamagata, Japan, 2003-2010.

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Viral metagenomics analysis demonstrates the diversity of viral flora in piglet diarrhoeic faeces in China

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

VP6-sequence-based cutoff values as a criterion for rotavirus species demarcation

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Candidate new rotavirus species in sheltered dogs, Hungary

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of genetic divergence among strains of porcine rotavirus C, with focus on VP4 and VP7 genotypes in Japan

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Human astrovirus serotypes

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Whole-genome analysis of two bovine rotavirus C strains: Shintoku and Toyama

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Group C rotavirus requires sialic acid for erythrocyte and cell receptor binding

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rotavirus VP8*: phylogeny, host range, and interaction with histo-blood group antigens

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Detection and characterisation of group A rotavirus in asymptomatic piglets in southern Ireland

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Subclinical porcine circovirus infection: what lies beneath

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Full genome characterization of a porcine-like human G9P[6] rotavirus strain isolated from an infant in Belgium

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Diagnosis of neuroinvasive astrovirus infection in an immunocompromised adult with encephalitis by unbiased next-generation sequencing

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Full-length genome analysis of G2, G9 and G11 porcine group A rotaviruses

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

First report of an astrovirus type 5 gastroenteritis outbreak in a residential elderly care home identified by sequencing

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2013).

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Human Rotavirus VP6-Specific Antibodies Mediate Intracellular Neutralization by Binding to a Quaternary Structure in the Transcriptional Pore

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Basic local alignment search tool

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The prevalence and genetic diversity of group A rotaviruses on pig farms in the Mekong Delta region of Vietnam

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Both Lewis and secretor status mediate susceptibility to rotavirus infections in a rotavirus genotype-dependent manner

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Diversity of VP7, VP4, VP6, NSP2, NSP4, and NSP5 genes of porcine rotavirus C: phylogenetic analysis and description of potential new VP7, VP4, VP6, and NSP4 genotypes

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Recommendations for the classification of group A rotaviruses using all 11 genomic RNA segments

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Detection and molecular characterization of Porcine astrovirus strains associated with swine diarrhea

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Astrovirus infections in humans and animals - molecular biology, genetic diversity, and interspecies transmissions.

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular characterization of a rare G9P[23] porcine rotavirus isolate from China

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RotaC: a web-based tool for the complete genome classification of group A rotaviruses

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Review of group A rotavirus strains reported in swine and cattle

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequences of the four larger proteins of a porcine group C rotavirus and comparison with the equivalent group a rotavirus proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/27184192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1016/J.MEEGID.2016.05.018

1 reference

Europe PubMed Central

PubMed publication ID

7 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

7 September 2017

ResearchGate publication ID

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