Atomic Force Microscopy Investigations of DNA Lesion Recognition in Nucleotide Excision Repair. (Q38750909)

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21 March 2020

title

Atomic Force Microscopy Investigations of DNA Lesion Recognition in Nucleotide Excision Repair (English)

1 reference

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21 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28570512%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

Jonas Gross

1 reference

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21 March 2020

Ingrid Tessmer

series ordinal

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21 March 2020

publication date

24 May 2017

1 reference

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Journal of Visualized Experiments

21 March 2020

published in

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21 March 2020

issue

123

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Conservation and Divergence in Nucleotide Excision Repair Lesion Recognition.

21 March 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5608143

Remodeling of RecG Helicase at the DNA Replication Fork by SSB Protein

3 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5608143

In TFIIH, XPD helicase is exclusively devoted to DNA repair

3 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5608143

Strand-specific recognition of DNA damages by XPD provides insights into nucleotide excision repair substrate versatility

3 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5608143

DNA substrate preparation for atomic force microscopy studies of protein-DNA interactions

3 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5608143

Single-stranded DNA loops as fiducial markers for exploring DNA-protein interactions in single molecule imaging

3 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5608143

AFM volumetric methods for the characterization of proteins and nucleic acids

3 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5608143

Single-molecule studies of DNA transcription using atomic force microscopy

3 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5608143

Specificity of binding of single-stranded DNA-binding protein to its target

3 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5608143

Damage recognition in nucleotide excision DNA repair.

3 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5608143

XPB helicase regulates DNA incision by the Thermoplasma acidophilum endonuclease Bax1.

3 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5608143

Functional and structural studies of the nucleotide excision repair helicase XPD suggest a polarity for DNA translocation

3 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5608143

Single-molecule analysis reveals two separate DNA-binding domains in the Escherichia coli UvrA dimer

3 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5608143

RAD50 and NBS1 form a stable complex functional in DNA binding and tethering

3 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5608143

Mechanism of MutS searching for DNA mismatches and signaling repair

3 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5608143

RNA polymerase and an activator form discrete subcomplexes in a transcription initiation complex

3 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5608143

UvrB domain 4, an autoinhibitory gate for regulation of DNA binding and ATPase activity.

3 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5608143

Determination of protein-DNA binding constants and specificities from statistical analyses of single molecules: MutS-DNA interactions

3 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5608143

DNA bending and unbending by MutS govern mismatch recognition and specificity

3 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5608143

The molecular machines of DNA repair: scanning force microscopy analysis of their architecture

3 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5608143

Silatrane-based surface chemistry for immobilization of DNA, protein-DNA complexes and other biological materials

3 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5608143

The presence of two UvrB subunits in the UvrAB complex ensures damage detection in both DNA strands

3 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5608143

Architecture of nucleotide excision repair complexes: DNA is wrapped by UvrB before and after damage recognition

3 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5608143

Crystal structure of UvrB, a DNA helicase adapted for nucleotide excision repair

3 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5608143

Involvement of a cryptic ATPase activity of UvrB and its proteolysis product, UvrB* in DNA repair.

3 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5608143

A novel single-molecule study to determine protein--protein association constants

3 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28570512

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The role of ATP binding and hydrolysis by UvrB during nucleotide excision repair

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28570512

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Structural basis for DNA recognition and processing by UvrB

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28570512

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.3791/55501

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28570512%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28570512%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

PubMed publication ID

28570512

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28570512%20AND%20SRC:MED&resulttype=core&format=json