Correlations between predicted protein disorder and post-translational modifications in plants (Q38688952)

5 September 2017

Correlations between predicted protein disorder and post-translational modifications in plants (English)

1 reference

5 September 2017

Tetsuya Sakurai

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Kazuo Shinozaki

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Atsushi Kurotani

1 reference

5 September 2017

Alexander A Tokmakov

series ordinal

1 reference

5 September 2017

Yutaka Kuroda

series ordinal

1 reference

5 September 2017

Yasuo Fukami

series ordinal

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5 September 2017

language of work or name

English

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publication date

23 January 2014

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5 September 2017

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5 September 2017

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5 September 2017

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5 September 2017

1095-1103

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Creative Commons Attribution 3.0 Unported

5 September 2017

start time

2 October 2016

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April 2023 Public Data File from Crossref

copyrighted

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cites work

Multifarious roles of intrinsic disorder in proteins illustrate its broad impact on plant biology

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Predicting and analyzing protein phosphorylation sites in plants using musite

6 September 2017

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Order by disorder in plant signaling

6 September 2017

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6 September 2017

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The tomato genome sequence provides insights into fleshy fruit evolution

6 September 2017

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Correlation between posttranslational modification and intrinsic disorder in protein.

6 September 2017

1 reference

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Phytozome: a comparative platform for green plant genomics

6 September 2017

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Characterization of the PRMT gene family in rice reveals conservation of arginine methylation

6 September 2017

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Post-translational modification of plant-made foreign proteins; glycosylation and beyond

6 September 2017

1 reference

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PlantPhos: using maximal dependence decomposition to identify plant phosphorylation sites with substrate site specificity

6 September 2017

1 reference

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Binary classification of protein molecules into intrinsically disordered and ordered segments

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

Computational Prediction of O-linked Glycosylation Sites that Preferentially Map on Intrinsically Disordered Regions of Extracellular Proteins

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

Intrinsically disordered proteins from A to Z

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

Arginine methylation of BCL-2 antagonist of cell death (BAD) counteracts its phosphorylation and inactivation by Akt.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

Musite, a tool for global prediction of general and kinase-specific phosphorylation sites.

6 September 2017

1 reference

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Plant-specific glycosylation patterns in the context of therapeutic protein production.

6 September 2017

1 reference

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Genome sequencing and analysis of the model grass Brachypodium distachyon

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

Genome sequence of the palaeopolyploid soybean

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

Phosphorylation-acetylation switch in the regulation of STAT1 signaling

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

Predicting intrinsic disorder in proteins: an overview

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

QMEAN server for protein model quality estimation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

The Sorghum bicolor genome and the diversification of grasses

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

The Arabidopsis Information Resource (TAIR): gene structure and function annotation.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

QMEAN: A comprehensive scoring function for model quality assessment.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

The TIGR Rice Genome Annotation Resource: improvements and new features

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

Prediction of Nepsilon-acetylation on internal lysines implemented in Bayesian Discriminant Method

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

Intrinsic disorder in transcription factors

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

Intrinsic protein disorder, amino acid composition, and histone terminal domains.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

RONN: the bio-basis function neural network technique applied to the detection of natively disordered regions in proteins

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

Comparing and combining predictors of mostly disordered proteins.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

ProteoMix: an integrated and flexible system for interactively analyzing large numbers of protein sequences

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

The DISOPRED server for the prediction of protein disorder

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

Prediction and Functional Analysis of Native Disorder in Proteins from the Three Kingdoms of Life

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

The importance of intrinsic disorder for protein phosphorylation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

SWISS-MODEL: An automated protein homology-modeling server

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

Glycosylation of proteins in plants and invertebrates.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

Intrinsic disorder in cell-signaling and cancer-associated proteins

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

Structural basis for the recognition of hydroxyproline in HIF-1 alpha by pVHL

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

Intrinsic disorder and protein function

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

Intrinsically disordered protein

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

Sequence complexity of disordered protein

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

Why are "natively unfolded" proteins unstructured under physiologic conditions?

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

Identification and characterization of two closely related histone H4 arginine 3 methyltransferases in Arabidopsis thaliana.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

Protein arginine methyltransferase 1: positively charged residues in substrate peptides distal to the site of methylation are important for substrate binding and catalysis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

RNA and protein interactions modulated by protein arginine methylation.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

POODLE-L: a two-level SVM prediction system for reliably predicting long disordered regions.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

Coupled folding and binding with alpha-helix-forming molecular recognition elements

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

Statistical analysis of the protein environment of N-glycosylation sites: implications for occupancy, structure, and folding.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3982157

Glycosylation motifs that direct arabinogalactan addition to arabinogalactan-proteins

31 August 2018

1 reference

12 December 2020

Surface accessibility of protein post-translational modifications

1 reference

12 December 2020

Orderly order in protein intrinsic disorder distribution: disorder in 3500 proteomes from viruses and the three domains of life

1 reference

12 December 2020

POODLE-S: web application for predicting protein disorder by using physicochemical features and reduced amino acid set of a position-specific scoring matrix

1 reference

12 December 2020

10.1093/BIOINFORMATICS/BTT762

Identifiers

DOI

1 reference

journals/bioinformatics/KurotaniTKFSS14

5 September 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

5 September 2017

PubMed publication ID

24403539

1 reference