Finding biomarkers in non-model species: literature mining of transcription factors involved in bovine embryo development (Q38495373)

3 September 2017

Finding biomarkers in non-model species: literature mining of transcription factors involved in bovine embryo development (English)

1 reference

3 September 2017

0 references

1 reference

Isabelle Hue

0 references

Nicolas Turenne

1 reference

3 September 2017

Evgeniy Tiys

1 reference

3 September 2017

Vladimir Ivanisenko

1 reference

3 September 2017

Nikolay Yudin

1 reference

3 September 2017

Elena Ignatieva

1 reference

3 September 2017

Damien Valour

1 reference

3 September 2017

Séverine A Degrelle

1 reference

3 September 2017

29 August 2012

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3 September 2017

1 reference

3 September 2017

1 reference

3 September 2017

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3 September 2017

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Creative Commons Attribution 2.0 Generic

3 September 2017

start time

29 August 2012

1 reference

April 2022 Public Data File from Crossref

copyrighted

1 reference

April 2022 Public Data File from Crossref

cites work

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A balancing act: mechanisms by which the fetus avoids rejection by the maternal immune system

6 September 2017

1 reference

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Visualization and analysis of a cardio vascular disease- and MUPP1-related biological network combining text mining and data warehouse approaches

6 September 2017

1 reference

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6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

Event extraction for systems biology by text mining the literature

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

Genetic-epigenetic intersection in trophoblast differentiation: implications for extraembryonic tissue function

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

Genes and signals regulating murine trophoblast cell development

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

Involvement of GATA transcription factors in the regulation of endogenous bovine interferon-tau gene transcription

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

TFCat: the curated catalog of mouse and human transcription factors

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

A census of human transcription factors: function, expression and evolution

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

Hyperosmolar stress induces global mRNA responses in placental trophoblast stem cells that emulate early post-implantation differentiation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

Novel actions of estrogen to promote proliferation: integration of cytoplasmic and nuclear pathways

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

Live and let die - regulation of villous trophoblast apoptosis in normal and abnormal pregnancies.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

Blastocyst elongation, trophoblastic differentiation, and embryonic pattern formation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

Combinatorial roles of protein kinase A, Ets2, and 3',5'-cyclic-adenosine monophosphate response element-binding protein-binding protein/p300 in the transcriptional control of interferon-tau expression in a trophoblast cell line

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

Gene expression in elongating and gastrulating embryos from ruminants.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

Molecular circuits shared by placental and cancer cells, and their implications in the proliferative, invasive and migratory capacities of trophoblasts

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

Text mining of full-text journal articles combined with gene expression analysis reveals a relationship between sphingosine-1-phosphate and invasiveness of a glioblastoma cell line

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

Molecular evidence for a critical period in mural trophoblast development in bovine blastocysts.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

Genetic regulation of stem cell origins in the mouse embryo.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

Overview of BioCreAtIvE: critical assessment of information extraction for biology

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

cDNA microarray analysis of bovine embryo gene expression profiles during the pre-implantation period

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

Protein ranking: from local to global structure in the protein similarity network

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

InterDom: a database of putative interacting protein domains for validating predicted protein interactions and complexes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

Vertebrate hairy and Enhancer of split related proteins: transcriptional repressors regulating cellular differentiation and embryonic patterning

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

Id2 is a retinoblastoma protein target and mediates signalling by Myc oncoproteins

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

Expression of proto-oncogenes in bovine preimplantation blastocysts

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

The COG database: a tool for genome-scale analysis of protein functions and evolution

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

Transforming growth factor-beta induces differentiation of the labyrinthine trophoblast stem cell line SM10.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

Caipirini: using gene sets to rank literature.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

23 June 2018

Trophoblast stem cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

Trophoblast cell differentiation: establishment, characterization, and modulation of a rat trophoblast cell line expressing members of the placental prolactin family

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

Text mining in livestock animal science: introducing the potential of text mining to animal sciences

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

Expression and localization of DLX3, PPARG and SP1 in bovine trophoblast during binucleated cell differentiation.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

RNA sequencing reveals novel gene clusters in bovine conceptuses associated with maternal recognition of pregnancy and implantation.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

Transcriptome changes at the initiation of elongation in the bovine conceptus

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

A small set of extra-embryonic genes defines a new landmark for bovine embryo staging.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

Comparative analysis and unification of domain-domain interaction networks

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

The Human Protein Atlas--a tool for pathology

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

Systematic identification of functional orthologs based on protein network comparison

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

Estrogen receptor beta (ERbeta) is expressed differently from ERalpha in bovine placentomes

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

Identification of differentially regulated genes during elongation and early implantation in the ovine trophoblast using complementary DNA array screening.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3563503

Conceptus-Endometrium Crosstalk During Maternal Recognition of Pregnancy in Cattle1

31 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1756-0381-5-12

Text mining: powering the database revolution

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1756-0381-5-12

Development of bovine blastocyst with a note on implantation

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22931563

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Trophoblast signalling: knowns and unknowns--a workshop report

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22931563

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Characterization of the placenta specific bovine mammalian achaete scute-like homologue 2 (Mash2) gene

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22931563

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1756-0381-5-12

1 reference

journals/biodatamining/TurenneTIYIVDH12

3 September 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

3 September 2017

PubMed publication ID

22931563

1 reference