New tools and functions in Data-out activities at Protein Data Bank Japan (PDBj). (Q38372057)

http://europepmc.org/abstract/PMC/5734392

9 January 2018

title

New tools and functions in Data-out activities at Protein Data Bank Japan (PDBj). (English)

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http://europepmc.org/abstract/PMC/5734392

9 January 2018

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9 June 2020

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9 June 2020

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9 June 2020

Akira R Kinjo

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9 June 2020

Hiroshi Wako

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9 June 2020

Shigeru Endo

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9 June 2020

Yuko Tsuchiya

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9 June 2020

Hiromu Sato

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9 June 2020

Hafumi Nishi

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9 June 2020

Kengo Kinoshita

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9 June 2020

Hirofumi Suzuki

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9 June 2020

Masashi Yokochi

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9 June 2020

Takeshi Iwata

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9 June 2020

Toshimichi Fujiwara

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Naohiro Kobayashi

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9 June 2020

Haruki Nakamura

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9 June 2020

publication date

17 August 2017

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http://europepmc.org/abstract/PMC/5734392

9 January 2018

published in

Protein Science

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9 June 2020

volume

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9 June 2020

issue

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9 June 2020

page(s)

95-102

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MMTF-An efficient file format for the transmission, visualization, and analysis of macromolecular structures

9 June 2020

cites work

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23 June 2018

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Normal mode analysis based on an elastic network model for biomolecules in the Protein Data Bank, which uses dihedral angles as independent variables

23 June 2018

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23 June 2018

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Conventions and workflows for using Situs

23 June 2018

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Protein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework format

23 June 2018

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23 June 2018

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PDBj Mine: design and implementation of relational database interface for Protein Data Bank Japan

23 June 2018

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Insights into protein flexibility: The relationship between normal modes and conformational change upon protein-protein docking

23 June 2018

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23 June 2018

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Structural basis for transcription elongation by bacterial RNA polymerase

23 June 2018

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The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data

23 June 2018

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Coarse-grained normal mode analysis in structural biology

23 June 2018

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23 June 2018

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Conformational change of proteins arising from normal mode calculations

23 June 2018

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Multiple subunit fitting into a low-resolution density map of a macromolecular complex using a gaussian mixture model.

23 June 2018

1 reference

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31 August 2018

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Ligand-induced conformational change of a protein reproduced by a linear combination of displacement vectors obtained from normal mode analysis

31 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28815765

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1002/PRO.3273

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28815765%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

1 reference

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9 June 2020

PubMed publication ID

28815765

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28815765%20AND%20SRC:MED&resulttype=core&format=json