Dengue virus NS3 serine protease. Crystal structure and insights into interaction of the active site with substrates by molecular modeling and structural analysis of mutational effects (Q38327973)

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English	Dengue virus NS3 serine protease. Crystal structure and insights into interaction of the active site with substrates by molecular modeling and structural analysis of mutational effects	retracted scientific article

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scholarly article

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Europe PubMed Central

PubMed publication ID

2 September 2017

retracted paper

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Dataset for "Continued use of retracted papers: Temporal trends in citations and (lack of) awareness of retractions shown in citation contexts in biomedicine"

Continued use of retracted papers: Temporal trends in citations and (lack of) awareness of retractions shown in citation contexts in biomedicine

Dengue virus NS3 serine protease. Crystal structure and insights into interaction of the active site with substrates by molecular modeling and structural analysis of mutational effects. (English)

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Europe PubMed Central

PubMed publication ID

2 September 2017

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crystal structure

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based on heuristic

inferred from title

author name string

Murthy HM

1

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Europe PubMed Central

PubMed publication ID

2 September 2017

Clum S

2

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Europe PubMed Central

PubMed publication ID

2 September 2017

Padmanabhan R

3

1 reference

Europe PubMed Central

PubMed publication ID

2 September 2017

language of work or name

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publication date

1 February 1999

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Europe PubMed Central

PubMed publication ID

2 September 2017

Journal of Biological Chemistry

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Europe PubMed Central

PubMed publication ID

2 September 2017

274

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Europe PubMed Central

PubMed publication ID

2 September 2017

9

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Europe PubMed Central

PubMed publication ID

2 September 2017

5573-5580

1 reference

Europe PubMed Central

PubMed publication ID

2 September 2017

describes a project that uses

molecular modelling

1 reference

based on heuristic

inferred from title

Dengue virus infection: Epidemiology, pathogenesis, clinical presentation, diagnosis, and prevention

1 reference

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Dengue/Dengue Hemorrhagic Fever: The Emergence of a Global Health Problem

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Origins of dengue type 2 viruses associated with increased pathogenicity in the Americas

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Sequence analysis of cloned dengue virus type 2 genome (New Guinea-C strain).

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Differences between translation products of tick-borne encephalitis virus RNA in cell-free systems from Krebs-2 cells and rabbit reticulocytes: involvement of membranes in the processing of nascent precursors of flavivirus structural proteins

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Analyses of the terminal sequences of West Nile virus structural proteins and of the in vitro translation of these proteins allow the proposal of a complete scheme of the proteolytic cleavages involved in their synthesis

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Acidotropic amines inhibit proteolytic processing of flavivirus prM protein

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Association between NS3 and NS5 Proteins of Dengue Virus Type 2 in the Putative RNA Replicase Is Linked to Differential Phosphorylation of NS5

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Flavivirus genome organization, expression, and replication

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Live and inactivated influenza vaccines induce similar humoral responses, but only live vaccines induce diverse T-cell responses in young children

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Dengue 2 virus NS2B and NS3 form a stable complex that can cleave NS3 within the helicase domain

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Processing of Japanese encephalitis virus non-structural proteins: NS2B-NS3 complex and heterologous proteases

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Evolutionarily conserved protein sequences of influenza a viruses, avian and human, as vaccine targets

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Cotranslational Membrane Insertion of the Serine Proteinase Precursor NS2B-NS3(Pro) of Dengue Virus Type 2 Is Required for Efficient in Vitro Processing and Is Mediated through the Hydrophobic Regions of NS2B

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Hepatitis C virus shares amino acid sequence similarity with pestiviruses and flaviviruses as well as members of two plant virus supergroups

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Dengue: the risk to developed and developing countries

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Proteolytic processing and membrane association of putative nonstructural proteins of hepatitis C virus

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Serine Proteases: Structure and Mechanism of Catalysis

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Crystallographic and NMR studies of the serine proteases

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Dissecting the catalytic triad of a serine protease

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Structural basis of substrate specificity in the serine proteases

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Catalytic hydroxyl/amine dyads within serine proteases

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Improved Fourier coefficients for maps using phases from partial structures with errors

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The crystal structure of hepatitis C virus NS3 proteinase reveals a trypsin-like fold and a structural zinc binding site

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Crystal structure of the hepatitis C virus NS3 protease domain complexed with a synthetic NS4A cofactor peptide

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Structure of the hydrophobic protein crambin determined directly from the anomalous scattering of sulphur

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The CCP4 suite: programs for protein crystallography

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Improved methods for building protein models in electron density maps and the location of errors in these models

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Free R value: a novel statistical quantity for assessing the accuracy of crystal structures

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PROCHECK: a program to check the stereochemical quality of protein structures

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Complex of NS3 protease and NS4A peptide of BK strain hepatitis C virus: A 2.2 Å resolution structure in a hexagonal crystal form

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21 January 2018

Where freedom is given, liberties are taken

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The hepatitis C virus encodes a serine protease involved in processing of the putative nonstructural proteins from the viral polyprotein precursor

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Solvent-accessible surfaces of proteins and nucleic acids

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Refined 1.6 A resolution crystal structure of the complex formed between porcine beta-trypsin and MCTI-A, a trypsin inhibitor of the squash family. Detailed comparison with bovine beta-trypsin and its complex

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Comparative analysis of viral cysteine protease structural models

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Mechanism of thiol protease catalysis: detection and stabilization of a tetrahedral intermediate in papain catalysis

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Structure-based strategies for drug design and discovery

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Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons

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On the size of the active site in proteases. I. Papain

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N-terminal domains of putative helicases of flavi- and pestiviruses may be serine proteases

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Characterization of the hepatitis C virus-encoded serine proteinase: determination of proteinase-dependent polyprotein cleavage sites

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Detection of a trypsin-like serine protease domain in flaviviruses and pestviruses

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In vitro processing of dengue virus structural proteins: cleavage of the pre-membrane protein

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Kinetic and structural analyses of hepatitis C virus polyprotein processing

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Activity of purified hepatitis C virus protease NS3 on peptide substrates

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Evidence that the N-terminal domain of nonstructural protein NS3 from yellow fever virus is a serine protease responsible for site-specific cleavages in the viral polyprotein

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Flavivirus replication strategy

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Processing of the yellow fever virus nonstructural polyprotein: a catalytically active NS3 proteinase domain and NS2B are required for cleavages at dibasic sites

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Hepatitis C virus NS3 protein polynucleotide-stimulated nucleoside triphosphatase and comparison with the related pestivirus and flavivirus enzymes

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Structures of product and inhibitor complexes of Streptomyces griseus protease A at 1.8 A resolution. A model for serine protease catalysis

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In vitro processing of dengue virus type 2 nonstructural proteins NS2A, NS2B, and NS3

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Nonstructural protein 3 of the hepatitis C virus encodes a serine-type proteinase required for cleavage at the NS3/4 and NS4/5 junctions

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Evaluation of single-crystal X-ray diffraction data from a position-sensitive detector

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Processing and localization of Dengue virus type 2 polyprotein precursor NS3-NS4A-NS4B-NS5

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Identifiers

10.1074/JBC.274.9.5573

1 reference

Europe PubMed Central

PubMed publication ID

2 September 2017

release_bureyvpomzcxndbct3wcgj53ku

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https://api.fatcat.wiki/v0/release/bureyvpomzcxndbct3wcgj53ku

24 November 2022

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PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

2 September 2017

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