Similarity-based machine learning methods for predicting drug-target interactions: a brief review (Q38128158)

29 August 2017

title

Similarity-based machine learning methods for predicting drug-target interactions: a brief review (English)

1 reference

29 August 2017

0 references

Ichigaku Takigawa

1 reference

29 August 2017

Hao Ding

1 reference

29 August 2017

Hiroshi Mamitsuka

series ordinal

1 reference

29 August 2017

Shanfeng Zhu

series ordinal

1 reference

29 August 2017

publication date

11 August 2013

1 reference

Briefings in Bioinformatics

29 August 2017

published in

1 reference

29 August 2017

1 reference

29 August 2017

1 reference

29 August 2017

page(s)

734-747

1 reference

Drug discovery: Predicting promiscuity

29 August 2017

cites work

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Predicting drug side-effect profiles: a chemical fragment-based approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Exploiting drug-disease relationships for computational drug repositioning

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Mining small-molecule screens to repurpose drugs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Identify drug repurposing candidates by mining the protein data bank

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

From genomics to chemical genomics: new developments in KEGG

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Chemical genetics: ligand-based discovery of gene function

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Database resources of the National Center for Biotechnology Information

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Keynote review: in vitro safety pharmacology profiling: an essential tool for successful drug development

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Multidimensional chemical genetic analysis of diversity-oriented synthesis-derived deacetylase inhibitors using cell-based assays

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Dissecting glucose signalling with diversity-oriented synthesis and small-molecule microarrays.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

The impact of informatics and computational chemistry on synthesis and screening

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Molecular docking using shape descriptors

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

A fast flexible docking method using an incremental construction algorithm.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Lead discovery using molecular docking

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Structure-based maximal affinity model predicts small-molecule druggability.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Drug design strategies for targeting G-protein-coupled receptors

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Statistical prediction of protein chemical interactions based on chemical structure and mass spectrometry data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Integrating statistical predictions and experimental verifications for enhancing protein-chemical interaction predictions in virtual screening

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Analysis of multiple compound–protein interactions reveals novel bioactive molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Prediction of drug-target interaction networks from the integration of chemical and genomic spaces.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Supervised prediction of drug-target interactions using bipartite local models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Protein-ligand interaction prediction: an improved chemogenomics approach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Semi-supervised drug-protein interaction prediction from heterogeneous biological spaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Gaussian interaction profile kernels for predicting drug-target interaction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Predicting drug-target interactions from chemical and genomic kernels using Bayesian matrix factorization.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Combining Drug and Gene Similarity Measures for Drug-Target Elucidation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Drug-target interaction prediction from chemical, genomic and pharmacological data in an integrated framework

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

A probabilistic model for mining implicit 'chemical compound-gene' relations from literature

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Large-scale prediction of drug-target relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Drug discovery in the age of systems biology: the rise of computational approaches for data integration.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

From in silico target prediction to multi-target drug design: current databases, methods and applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

BRENDA, the enzyme database: updates and major new developments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

SuperTarget and Matador: resources for exploring drug-target relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

DrugBank: a knowledgebase for drugs, drug actions and drug targets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

The European Bioinformatics Institute's data resources

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

A side effect resource to capture phenotypic effects of drugs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

The BioGRID Interaction Database: 2008 update

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Large-scale mapping of human protein-protein interactions by mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Towards a proteome-scale map of the human protein–protein interaction network

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

A human protein-protein interaction network: a resource for annotating the proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Gene ontology: tool for the unification of biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Infrastructure for the life sciences: design and implementation of the UniProt website

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Mining significant substructure pairs for interpreting polypharmacology in drug-target network

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Chemogenomic approaches to drug discovery: similar receptors bind similar ligands

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Supervised reconstruction of biological networks with local models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

SIRENE: supervised inference of regulatory networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Prediction of drug-target interactions and drug repositioning via network-based inference

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Development of a chemical structure comparison method for integrated analysis of chemical and genomic information in the metabolic pathways.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Identification of common molecular subsequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

STITCH 3: zooming in on protein-chemical interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Predicting new molecular targets for known drugs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Drug target identification using side-effect similarity

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

Principles of docking: An overview of search algorithms and a guide to scoring functions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT056

The relationship between the sequence identities of alpha helical proteins in the PDB and the molecular similarities of their ligands

21 January 2018

1 reference

7 December 2024

https://opencitations.net/index/api/v1/citations/10.1021/CI010364Q

Identifiers

DOI

10.1093/BIB/BBT056

1 reference

29 August 2017

DBLP publication ID

journals/bib/DingTMZ14

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference