Three independent determinants of protein evolutionary rate (Q38080742)

28 August 2017

title

Three independent determinants of protein evolutionary rate (English)

1 reference

28 August 2017

Sun Shim Choi

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28 August 2017

Sridhar Hannenhalli

series ordinal

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28 August 2017

publication date

12 February 2013

1 reference

Journal of Molecular Evolution

28 August 2017

published in

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28 August 2017

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28 August 2017

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28 August 2017

page(s)

98-111

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Gene expression and molecular evolution

28 August 2017

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Experimental Determination and System Level Analysis of Essential Genes in Escherichia coli MG1655

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Determinants of translation efficiency and accuracy

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The human disease network

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Comparative analysis of essential genes and nonessential genes in Escherichia coli K12.

21 January 2018

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Genetic linkage and molecular evolution

21 January 2018

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Patterns of intron sequence evolution in Drosophila are dependent upon length and GC content

21 January 2018

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Molecular evolution in large genetic networks: does connectivity equal constraint?

21 January 2018

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Human functional genetic studies are biased against the medically most relevant primate-specific genes

21 January 2018

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Toward a molecular understanding of pleiotropy

21 January 2018

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Codon usage bias is correlated with gene expression levels in the fission yeast Schizosaccharomyces pombe

21 January 2018

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Protein dispensability and rate of evolution

21 January 2018

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Evidence against the energetic cost hypothesis for the short introns in highly expressed genes

21 January 2018

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How can the low levels of DNA sequence variation in regions of the drosophila genome with low recombination rates be explained?

21 January 2018

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Expression level, cellular compartment and metabolic network position all influence the average selective constraint on mammalian enzymes

21 January 2018

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Do essential genes evolve slowly?

21 January 2018

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A test of translational selection at 'silent' sites in the human genome: base composition comparisons in alternatively spliced genes.

21 January 2018

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Molecular evolution of synonymous codon usage in Populus

21 January 2018

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Lethality and centrality in protein networks

21 January 2018

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No simple dependence between protein evolution rate and the number of protein-protein interactions: only the most prolific interactors tend to evolve slowly

21 January 2018

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Evolutionary rates and centrality in the yeast gene regulatory network

21 January 2018

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21 January 2018

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On Some Principles Governing Molecular Evolution

21 January 2018

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21 January 2018

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The action of selection on codon bias in the human genome is related to frequency, complexity, and chronology of amino acids

21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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Evolution of protein-coding genes in Drosophila.

21 January 2018

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Translationally optimal codons associate with aggregation-prone sites in proteins

21 January 2018

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Evolution of proteins and gene expression levels are coupled in Drosophila and are independently associated with mRNA abundance, protein length, and number of protein-protein interactions.

21 January 2018

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Impacts of gene essentiality, expression pattern, and gene compactness on the evolutionary rate of mammalian proteins

21 January 2018

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Proportion of solvent-exposed amino acids in a protein and rate of protein evolution.

21 January 2018

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Does recombination improve selection on codon usage? Lessons from nematode and fly complete genomes

21 January 2018

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21 January 2018

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Intron size and exon evolution in Drosophila

21 January 2018

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21 January 2018

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Relationship between amino acid composition and gene expression in the mouse genome.

21 January 2018

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Gene length and codon usage bias in Drosophila melanogaster, Saccharomyces cerevisiae and Escherichia coli

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An integrated view of protein evolution

21 January 2018

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Expression breadth and expression abundance behave differently in correlations with evolutionary rates

21 January 2018

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Localized network centrality and essentiality in the yeast-protein interaction network

21 January 2018

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Splicing and the evolution of proteins in mammals

21 January 2018

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Comparative and functional analysis of intron-mediated enhancement signals reveals conserved features among plants

21 January 2018

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Sequence variability of Rhizobiales orthologs and relationship with physico-chemical characteristics of proteins

21 January 2018

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Differentiated evolutionary rates in alternative exons and the implications for splicing regulation

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Multifunctionality dominantly determines the rate of human housekeeping and tissue specific interacting protein evolution.

21 January 2018

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Evolutionary rates and expression level in Chlamydomonas

21 January 2018

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Intron size correlates positively with recombination rate in Caenorhabditis elegans

21 January 2018

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Intron length evolution in Drosophila.

21 January 2018

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The relationship between relative solvent accessibility and evolutionary rate in protein evolution

21 January 2018

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Selection for the compactness of highly expressed genes in Gallus gallus

21 January 2018

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21 January 2018

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The quest for the universals of protein evolution

21 January 2018

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An analysis of determinants of amino acids substitution rates in bacterial proteins

21 January 2018

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Contrasting patterns of evolution following whole genome versus tandem duplication events in Populus

21 January 2018

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Protein protein interactions, evolutionary rate, abundance and age.

21 January 2018

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Gene expression levels influence amino acid usage and evolutionary rates in endosymbiotic bacteria

21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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Synonymous codon usage in Escherichia coli: selection for translational accuracy.

21 January 2018

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Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome

21 January 2018

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The constraints protein-protein interactions place on sequence divergence

21 January 2018

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Slow protein evolutionary rates are dictated by surface–core association

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Ubiquitous expression and embryonic requirement for RNA polymerase II coactivator subunit Srb7 in mice

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Evolutionary rate and gene expression across different brain regions

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The signature of selection mediated by expression on human genes

21 January 2018

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Intron length and codon usage.

21 January 2018

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Compactness of human housekeeping genes: selection for economy or genomic design?

21 January 2018

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"Genome design" model: evidence from conserved intronic sequence in human-mouse comparison

21 January 2018

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Systemic factors dominate mammal protein evolution.

21 January 2018

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Selection for translation efficiency on synonymous polymorphisms in recent human evolution

21 January 2018

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Functional genomic analysis of the rates of protein evolution

21 January 2018

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Why is the correlation between gene importance and gene evolutionary rate so weak?

21 January 2018

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Evolutionary constraints on yeast protein size

21 January 2018

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Population genetics of translational robustness

21 January 2018

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21 January 2018

Biochemical evolution

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Comparable contributions of structural-functional constraints and expression level to the rate of protein sequence evolution.

21 January 2018

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Effects of gene expression on molecular evolution in Arabidopsis thaliana and Arabidopsis lyrata.

21 January 2018

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Rate of protein evolution versus fitness effect of gene deletion

21 January 2018

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Protein misinteraction avoidance causes highly expressed proteins to evolve slowly

21 January 2018

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TopNet: a tool for comparing biological sub-networks, correlating protein properties with topological statistics

21 January 2018

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Genome factor and gene pleiotropy hypotheses in protein evolution

21 January 2018

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Significant impact of protein dispensability on the instantaneous rate of protein evolution

21 January 2018

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Mammalian housekeeping genes evolve more slowly than tissue-specific genes

21 January 2018

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Contact density affects protein evolutionary rate from bacteria to animals.

21 January 2018

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Translationally optimal codons associate with structurally sensitive sites in proteins

21 January 2018

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On the nature of human housekeeping genes

21 January 2018

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Why do hubs in the yeast protein interaction network tend to be essential: reexamining the connection between the network topology and essentiality

21 January 2018

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Evolutionary processes and evolutionary noise at the molecular level. I. Functional density in proteins

21 January 2018

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Translational selection and molecular evolution

21 January 2018

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Gene Expression Evolves Faster in Narrowly Than in Broadly Expressed Mammalian Genes

21 January 2018

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The effect of linkage on limits to artificial selection

21 January 2018

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12 December 2020

Understanding relationship between sequence and functional evolution in yeast proteins

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12 December 2020

Structural determinants of protein evolution are context-sensitive at the residue level

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12 December 2020

Gene expression patterns are correlated with genomic and genic structure in soybean

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12 December 2020

Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy.

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12 December 2020

Highly expressed genes in yeast evolve slowly.

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12 December 2020

Evolutionary rate variation in eukaryotic lineage specific human intronless proteins

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12 December 2020

Missense misreading of asparagine codons as a function of codon identity and context

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12 December 2020

Codon usage bias covaries with expression breadth and the rate of synonymous evolution in humans, but this is not evidence for selection

1 reference

12 December 2020

Conservation, relocation and duplication in genome evolution

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12 December 2020

Population, evolutionary and genomic consequences of interference selection

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12 December 2020

Determinants of exon-level evolutionary rates in Arabidopsis species

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12 December 2020

A genome-wide survey of changes in protein evolutionary rates across four closely related species of Saccharomyces sensu stricto group

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12 December 2020

Compact genes are highly expressed in the moss Physcomitrella patens

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12 December 2020

Low codon bias and high rates of synonymous substitution in Drosophila hydei and D. melanogaster histone genes

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12 December 2020

The evolutionary advantage of recombination

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12 December 2020

Reduced natural selection associated with low recombination in Drosophila melanogaster.

1 reference

12 December 2020

Natural selection on synonymous sites is correlated with gene length and recombination in Drosophila.

1 reference

12 December 2020

Protein evolutionary rates correlate with expression independently of synonymous substitutions in Helicobacter pylori

1 reference

12 December 2020

Selection for short introns in highly expressed genes

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12 December 2020

Low rates of expression profile divergence in highly expressed genes and tissue-specific genes during mammalian evolution

1 reference

12 December 2020

Determinants of substitution rates in mammalian genes: expression pattern affects selection intensity but not mutation rate

1 reference

12 December 2020

Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks

1 reference

12 December 2020

In plants, highly expressed genes are the least compact

1 reference

12 December 2020

Assessing determinants of exonic evolutionary rates in mammals

1 reference

12 December 2020

Molecular analysis of the asense gene, a member of the achaete-scute complex of Drosophila melanogaster, and its novel role in optic lobe development.

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12 December 2020

Systemic determinants of gene evolution and function

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12 December 2020

Systematically assessing the influence of 3-dimensional structural context on the molecular evolution of mammalian proteomes

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12 December 2020

Interaction and domain networks of yeast

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12 December 2020

Assessing the determinants of evolutionary rates in the presence of noise

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12 December 2020

The correlation between intron length and recombination in drosophila. Dynamic equilibrium between mutational and selective forces.

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12 December 2020

Energy constraints on the evolution of gene expression

1 reference

12 December 2020

Essential Genes Are More Evolutionarily Conserved Than Are Nonessential Genes in Bacteria

1 reference

12 December 2020

Essential genes are more evolutionarily conserved than are nonessential genes in bacteria

1 reference

12 December 2020

10.1007/S00239-013-9543-6

Identifiers

DOI

1 reference

Dimensions Publication ID

28 August 2017

1000396269

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