Classification of metagenomic sequences: methods and challenges (Q38042040)

27 August 2017

title

Classification of metagenomic sequences: methods and challenges (English)

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27 August 2017

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Sharmila S Mande

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27 August 2017

author name string

Monzoorul Haque Mohammed

series ordinal

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27 August 2017

Tarini Shankar Ghosh

series ordinal

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27 August 2017

publication date

8 September 2012

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Briefings in Bioinformatics

27 August 2017

published in

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27 August 2017

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27 August 2017

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27 August 2017

page(s)

669-681

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Community structure and metabolism through reconstruction of microbial genomes from the environment

27 August 2017

cites work

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

On the origin of prokaryotic species.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

Impact of 16S rRNA gene sequence analysis for identification of bacteria on clinical microbiology and infectious diseases

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

Computational challenges of sequence classification in microbiomic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

Basic local alignment search tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

Fast and accurate long-read alignment with Burrows-Wheeler transform

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

CAMERA: a community resource for metagenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

MEGAN analysis of metagenomic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

SOrt-ITEMS: Sequence orthology based approach for improved taxonomic estimation of metagenomic sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

ProViDE: A software tool for accurate estimation of viral diversity in metagenomic samples

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

MARTA: a suite of Java-based tools for assigning taxonomic status to DNA sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

Phylogenetic classification of short environmental DNA fragments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

A simple, fast, and accurate method of phylogenomic inference

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

MLTreeMap--accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

Treephyler: fast taxonomic profiling of metagenomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

Aligning short reads to reference alignments and trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

Accurate phylogenetic classification of variable-length DNA fragments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

TACOA: taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

ClaMS: A Classifier for Metagenomic Sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

RAIphy: Phylogenetic classification of metagenomics samples using iterative refinement of relative abundance index profiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

SPHINX—an algorithm for taxonomic binning of metagenomic sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

Binning sequences using very sparse labels within a metagenome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

CompostBin: A DNA Composition-Based Algorithm for Binning Environmental Shotgun Reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

A novel abundance-based algorithm for binning metagenomic sequences using l-tuples.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

A robust and accurate binning algorithm for metagenomic sequences with arbitrary species abundance ratio

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

Evolutionary implications of microbial genome tetranucleotide frequency biases

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

Metagenome of the gut of a malnourished child

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

The oral metagenome in health and disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

A human gut microbial gene catalogue established by metagenomic sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

Use of simulated data sets to evaluate the fidelity of metagenomic processing methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

MetaSim: a sequencing simulator for genomics and metagenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

Metagenomic sequencing of an in vitro-simulated microbial community

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

Eu-Detect: an algorithm for detecting eukaryotic sequences in metagenomic data sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

Fast identification and removal of sequence contamination from genomic and metagenomic datasets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

Genomic DNA amplification from a single bacterium

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

Matching phylogeny and metabolism in the uncultured marine bacteria, one cell at a time

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS054

21 January 2018

Identifiers

DOI

10.1093/BIB/BBS054

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27 August 2017

DBLP publication ID

journals/bib/MandeMG12

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DBLP Dataset 2021-01-02

28 January 2021

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