Accessing complex crop genomes with next-generation sequencing (Q38040652)

27 August 2017

title

Accessing complex crop genomes with next-generation sequencing (English)

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27 August 2017

Jacqueline Batley

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David Edwards

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Rod J Snowdon

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27 August 2017

language of work or name

English

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publication date

5 September 2012

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Theoretical and Applied Genetics

27 August 2017

published in

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27 August 2017

volume

126

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27 August 2017

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27 August 2017

page(s)

1-11

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describes a project that uses

27 August 2017

massive parallel sequencing

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Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines.

inferred from title

cites work

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Comparative mapping of quantitative trait loci involved in heterosis for seedling and yield traits in oilseed rape (Brassica napus L.).

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Next-generation sequencing applications for wheat crop improvement.

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Enrichment of genomic DNA for polymorphism detection in a non-model highly polyploid crop plant.

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Molecular basis of evolutionary events that shaped the hardness locus in diploid and polyploid wheat species (Triticum and Aegilops).

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Single nucleotide polymorphism discovery in barley using autoSNPdb

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Future tools for association mapping in crop plants

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Bread matters: a national initiative to profile the genetic diversity of Australian wheat

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Invited review: Genomic selection in dairy cattle: progress and challenges

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Genomic advances will herald new insights into the Brassica: Leptosphaeria maculans pathosystem

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Discovering genetic polymorphisms in next-generation sequencing data

21 January 2018

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Genome sequencing and analysis of the model grass Brachypodium distachyon

21 January 2018

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Genomic selection in plant breeding: from theory to practice

21 January 2018

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Flow karyotyping and chromosome sorting in bread wheat ( Triticum aestivum L.).

21 January 2018

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Analysis and sorting of rye (Secale cereale L.) chromosomes using flow cytometry.

21 January 2018

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Single nucleotide polymorphism discovery from wheat next-generation sequence data.

21 January 2018

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Bioinformatics tools and databases for analysis of next-generation sequence data.

21 January 2018

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Genomic plasticity and the diversity of polyploid plants

21 January 2018

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Sequence composition, organization, and evolution of the core Triticeae genome

21 January 2018

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A knockout mutation in the lignin biosynthesis gene CCR1 explains a major QTL for acid detergent lignin content in Brassica napus seeds.

21 January 2018

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Discovery of Single Nucleotide Polymorphisms in Complex Genomes Using SGSautoSNP.

21 January 2018

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Genome comparisons reveal a dominant mechanism of chromosome number reduction in grasses and accelerated genome evolution in Triticeae.

21 January 2018

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Chromosome triplication found across the tribe Brassiceae.

21 January 2018

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Targeted identification of genomic regions using TAGdb

21 January 2018

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Gene content and virtual gene order of barley chromosome 1H.

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00122-012-1964-X

Unlocking the barley genome by chromosomal and comparative genomics

21 January 2018

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Linkage illuminates a complex genome

21 January 2018

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Genetic properties of the maize nested association mapping population

21 January 2018

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Sequencing technologies - the next generation

21 January 2018

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Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers

21 January 2018

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Development of chromosome-arm-specific microsatellite markers in Triticum aestivum (Poaceae) using NGS technology

21 January 2018

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Next-generation genetics in plants

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00122-012-1964-X

Digital transcriptome profiling from attomole-level RNA samples

21 January 2018

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Segmental structure of the Brassica napus genome based on comparative analysis with Arabidopsis thaliana

21 January 2018

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Characterizing the composition and evolution of homoeologous genomes in hexaploid wheat through BAC-end sequencing on chromosome 3B.

21 January 2018

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A physical map of the 1-gigabase bread wheat chromosome 3B.

21 January 2018

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Mapping with RAD (restriction-site associated DNA) markers to rapidly identify QTL for stem rust resistance in Lolium perenne

21 January 2018

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Differential methylation of genes and repeats in land plants

21 January 2018

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An integrated semiconductor device enabling non-optical genome sequencing

21 January 2018

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Updating of transposable element annotations from large wheat genomic sequences reveals diverse activities and gene associations

21 January 2018

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Development of chromosome-specific BAC resources for genomics of bread wheat

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00122-012-1964-X

Targeted analysis of nucleotide and copy number variation by exon capture in allotetraploid wheat genome

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00122-012-1964-X

Genome sequence of the palaeopolyploid soybean

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00122-012-1964-X

The B73 Maize Genome: Complexity, Diversity, and Dynamics

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00122-012-1964-X

Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00122-012-1964-X

Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00122-012-1964-X

The first meiosis of resynthesized Brassica napus, a genome blender.

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00122-012-1964-X

Genome sequence and analysis of the tuber crop potato

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00122-012-1964-X

Identification and characterization of candidate Rlm4 blackleg resistance genes in Brassica napus using next-generation sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00122-012-1964-X

Comparative genomics of Brassica oleracea and Arabidopsis thaliana reveal gene loss, fragmentation, and dispersal after polyploidy

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00122-012-1964-X

Single nucleotide polymorphism (SNP) discovery in the polyploid Brassica napus using Solexa transcriptome sequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00122-012-1964-X

Detection of chromosomal rearrangements derived from homologous recombination in four mapping populations of Brassica napus L.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00122-012-1964-X

Next-generation sequencing technologies and their implications for crop genetics and breeding

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00122-012-1964-X

Development of flow cytogenetics and physical genome mapping in chickpea (Cicer arietinum L.).

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00122-012-1964-X

Exploring plant transcriptomes using ultra high-throughput sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00122-012-1964-X

Integration of linkage maps for the Amphidiploid Brassica napus and comparative mapping with Arabidopsis and Brassica rapa.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00122-012-1964-X

The genome of the mesopolyploid crop species Brassica rapa

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00122-012-1964-X

Rapid development of PCR-based genome-specific repetitive DNA junction markers in wheat.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00122-012-1964-X

Targeted re-sequencing of the allohexaploid wheat exome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00122-012-1964-X

Annotation-based genome-wide SNP discovery in the large and complex Aegilops tauschii genome using next-generation sequencing without a reference genome sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00122-012-1964-X

Genetic design and statistical power of nested association mapping in maize

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00122-012-1964-X

Restriction fragment length polymorphisms and genetic improvement of agricultural species

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00122-012-1964-X

An association transcriptomics approach to the prediction of hybrid performance

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00122-012-1964-X

Next-generation sequencing and syntenic integration of flow-sorted arms of wheat chromosome 4A exposes the chromosome structure and gene content

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00122-012-1964-X

Transcript‐specific, single‐nucleotide polymorphism discovery and linkage analysis in hexaploid bread wheat (Triticum aestivum L.)

21 January 2018

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12 December 2020

A sense of self: the role of DNA sequence elimination in allopolyploidization

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12 December 2020

Rapid identification and determination of purity of flow-sorted plant chromosomes using C-PRINS.

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12 December 2020

WheatGenome.info: An Integrated Database and Portal for Wheat Genome Information

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12 December 2020

Broadening the avenue of intersubgenomic heterosis in oilseed Brassica

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12 December 2020

Physical mapping of a large plant genome using global high-information-content-fingerprinting: the distal region of the wheat ancestor Aegilops tauschii chromosome 3DS

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12 December 2020

A tailed PCR procedure for cost-effective, two-order multiplex sequencing of candidate genes in polyploid plants

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12 December 2020

Biased gene fractionation and dominant gene expression among the subgenomes of Brassica rapa

1 reference

12 December 2020

Construction and application for QTL analysis of a Restriction Site Associated DNA (RAD) linkage map in barley

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12 December 2020

Metaphase chromosome accumulation and flow karyotypes in rice (Oryza sativa L.) root tip meristem cells.

1 reference

12 December 2020

Flow-cytometric characterization and sorting of plant chromosomes

1 reference

12 December 2020

Prediction of total genetic value using genome-wide dense marker maps

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12 December 2020

Technology: Getting Moore from DNA sequencing

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12 December 2020

Flow sorting of mitotic chromosomes in common wheat (Triticum aestivum L.).

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12 December 2020

Genetic and physical mapping of flowering time loci in canola (Brassica napus L.)

1 reference

12 December 2020

Sequencing wheat chromosome arm 7BS delimits the 7BS/4AL translocation and reveals homoeologous gene conservation

1 reference

12 December 2020

Genomic and metabolic prediction of complex heterotic traits in hybrid maize

1 reference

12 December 2020

10.1007/S00122-012-1964-X

Identifiers

DOI

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27 August 2017

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