Structural and functional insights into eukaryotic mRNA decapping (Q37940414)

25 August 2017

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title

Structural and functional insights into eukaryotic mRNA decapping (English)

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25 August 2017

Rohini Qamra

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25 August 2017

Haiwei Song

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25 August 2017

Sharon H. M. Ling

series ordinal

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21957006

13 December 2024

language of work or name

English

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=21957006

13 December 2024

publication date

2 September 2010

1 reference

full work available at URL

25 August 2017

https://api.wiley.com/onlinelibrary/tdm/v1/articles/10.1002%2Fwrna.44

1 reference

https://wires.onlinelibrary.wiley.com/doi/pdf/10.1002/wrna.44

13 December 2024

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Wiley interdisciplinary reviews. RNA

13 December 2024

published in

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25 August 2017

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25 August 2017

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25 August 2017

page(s)

193-208

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Messenger RNA turnover in eukaryotes: pathways and enzymes

25 August 2017

cites work

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The enzymes and control of eukaryotic mRNA turnover

21 January 2018

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Degradation of histone mRNA requires oligouridylation followed by decapping and simultaneous degradation of the mRNA both 5' to 3' and 3' to 5'

21 January 2018

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Decapping is preceded by 3' uridylation in a novel pathway of bulk mRNA turnover

21 January 2018

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3' Terminal oligo U-tract-mediated stimulation of decapping

21 January 2018

1 reference

Eukaryotic mRNA decapping

21 January 2018

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Deadenylation of the unstable mRNA encoded by the yeast MFA2 gene leads to decapping followed by 5'-->3' digestion of the transcript

21 January 2018

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Nonsense-mediated mRNA decapping occurs on polyribosomes in Saccharomyces cerevisiae

21 January 2018

1 reference

Co-translational mRNA decay in Saccharomyces cerevisiae

21 January 2018

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A novel mRNA-decapping activity in HeLa cytoplasmic extracts is regulated by AU-rich elements

21 January 2018

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Recruitment and activation of mRNA decay enzymes by two ARE-mediated decay activation domains in the proteins TTP and BRF-1

21 January 2018

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MicroRNA-dependent localization of targeted mRNAs to mammalian P-bodies

21 January 2018

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Argonaute 2/RISC resides in sites of mammalian mRNA decay known as cytoplasmic bodies

21 January 2018

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The DCP2 protein is required for mRNA decapping in Saccharomyces cerevisiae and contains a functional MutT motif

21 January 2018

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Analysis of recombinant yeast decapping enzyme

21 January 2018

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Human Dcp2: a catalytically active mRNA decapping enzyme located in specific cytoplasmic structures

21 January 2018

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Capping of eucaryotic mRNAs

21 January 2018

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Viral and cellular mRNA capping: past and prospects

21 January 2018

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mRNA decapping activities and their biological roles

21 January 2018

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21 January 2018

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P bodies: at the crossroads of post-transcriptional pathways

21 January 2018

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P bodies and the control of mRNA translation and degradation

21 January 2018

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Translation repression in human cells by microRNA-induced gene silencing requires RCK/p54

21 January 2018

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Edc3p and a glutamine/asparagine-rich domain of Lsm4p function in processing body assembly in Saccharomyces cerevisiae

21 January 2018

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P-body formation is a consequence, not the cause, of RNA-mediated gene silencing

21 January 2018

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Processing bodies are not required for mammalian nonsense-mediated mRNA decay

21 January 2018

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Identification of a human decapping complex associated with hUpf proteins in nonsense-mediated decay

21 January 2018

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The hDcp2 protein is a mammalian mRNA decapping enzyme

21 January 2018

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Crystal structure and functional analysis of Dcp2p from Schizosaccharomyces pombe

21 January 2018

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Functional characterization of the mammalian mRNA decapping enzyme hDcp2

21 January 2018

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mRNA decapping is promoted by an RNA-binding channel in Dcp2

21 January 2018

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Dcp2 Decaps m2,2,7GpppN-capped RNAs, and its activity is sequence and context dependent

21 January 2018

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Structural Basis of Dcp2 Recognition and Activation by Dcp1

21 January 2018

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Crystal structure of Dcp1p and its functional implications in mRNA decapping

21 January 2018

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EVH1 domains: structure, function and interactions

21 January 2018

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Multiple processing body factors and the ARE binding protein TTP activate mRNA decapping

21 January 2018

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Arabidopsis DCP2, DCP1, and VARICOSE form a decapping complex required for postembryonic development

21 January 2018

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Ge-1 is a central component of the mammalian cytoplasmic mRNA processing body

21 January 2018

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DCP1 forms asymmetric trimers to assemble into active mRNA decapping complexes in metazoa

21 January 2018

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The C-terminal region of Ge-1 presents conserved structural features required for P-body localization

21 January 2018

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Crystal structure of human Edc3 and its functional implications

21 January 2018

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An essential component of the decapping enzyme required for normal rates of mRNA turnover

21 January 2018

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Decapping and Decay of Messenger RNA Occur in Cytoplasmic Processing Bodies

21 January 2018

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A role for Q/N-rich aggregation-prone regions in P-body localization.

21 January 2018

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Analysis of P-body assembly in Saccharomyces cerevisiae

21 January 2018

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General translational repression by activators of mRNA decapping

21 January 2018

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The control of mRNA decapping and P-body formation.

21 January 2018

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Processing bodies require RNA for assembly and contain nontranslating mRNAs

21 January 2018

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The developmental timing regulator AIN-1 interacts with miRISCs and may target the argonaute protein ALG-1 to cytoplasmic P bodies in C. elegans

21 January 2018

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The GW182 protein colocalizes with mRNA degradation associated proteins hDcp1 and hLSm4 in cytoplasmic GW bodies

21 January 2018

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Targeting of aberrant mRNAs to cytoplasmic processing bodies

21 January 2018

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SMG7 acts as a molecular link between mRNA surveillance and mRNA decay

21 January 2018

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ARE-mRNA degradation requires the 5'-3' decay pathway.

21 January 2018

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Mutations in translation initiation factors lead to increased rates of deadenylation and decapping of mRNAs in Saccharomyces cerevisiae

21 January 2018

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mRNA decapping in yeast requires dissociation of the cap binding protein, eukaryotic translation initiation factor 4E.

21 January 2018

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Cytoplasmic foci are sites of mRNA decay in human cells

21 January 2018

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Movement of eukaryotic mRNAs between polysomes and cytoplasmic processing bodies

21 January 2018

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Interrelationships of the pathways of mRNA decay and translation in eukaryotic cells

21 January 2018

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Poly(A)-binding proteins: multifunctional scaffolds for the post-transcriptional control of gene expression

21 January 2018

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Modulation of eukaryotic mRNA stability via the cap-binding translation complex eIF4F.

21 January 2018

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A turnover pathway for both stable and unstable mRNAs in yeast: evidence for a requirement for deadenylation

21 January 2018

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Mechanisms and control of mRNA decapping in Saccharomyces cerevisiae

21 January 2018

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The cap-to-tail guide to mRNA turnover

21 January 2018

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Identification of an mRNA-decapping regulator implicated in X-linked mental retardation

21 January 2018

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Turnover mechanisms of the stable yeast PGK1 mRNA

21 January 2018

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mRNA stabilization by poly(A) binding protein is independent of poly(A) and requires translation.

21 January 2018

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eIF4 initiation factors: effectors of mRNA recruitment to ribosomes and regulators of translation

21 January 2018

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Poly(A)-binding-protein-mediated regulation of hDcp2 decapping in vitro

21 January 2018

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Cap-dependent deadenylation of mRNA

21 January 2018

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Interaction between a poly(A)-specific ribonuclease and the 5' cap influences mRNA deadenylation rates in vitro

21 January 2018

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The mRNA cap structure stimulates rate of poly(A) removal and amplifies processivity of degradation

21 January 2018

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Computational modeling and experimental analysis of nonsense-mediated decay in yeast

21 January 2018

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A member of a gene family on Xp22.3, VCX-A, is deleted in patients with X-linked nonspecific mental retardation

21 January 2018

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Deletion of VCX-A due to NAHR plays a major role in the occurrence of mental retardation in patients with X-linked ichthyosis

21 January 2018

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Modulation of neuritogenesis by a protein implicated in X-linked mental retardation

21 January 2018

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The two proteins Pat1p (Mrt1p) and Spb8p interact in vivo, are required for mRNA decay, and are functionally linked to Pab1p

21 January 2018

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A Sm-like protein complex that participates in mRNA degradation

21 January 2018

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The DEAD box helicase, Dhh1p, functions in mRNA decapping and interacts with both the decapping and deadenylase complexes.

21 January 2018

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The DEAD box protein Dhh1 stimulates the decapping enzyme Dcp1

21 January 2018

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Yeast Sm-like proteins function in mRNA decapping and decay

21 January 2018

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The active form of Xp54 RNA helicase in translational repression is an RNA-mediated oligomer

21 January 2018

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A conserved role of a DEAD box helicase in mRNA masking

21 January 2018

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Crystal structure and functional analysis of DEAD-box protein Dhh1p

21 January 2018

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Loss of translational control in yeast compromised for the major mRNA decay pathway.

21 January 2018

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Pat1 contains distinct functional domains that promote P-body assembly and activation of decapping

21 January 2018

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Targeting an mRNA for decapping: displacement of translation factors and association of the Lsm1p-7p complex on deadenylated yeast mRNAs

21 January 2018

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Identification of Edc3p as an enhancer of mRNA decapping in Saccharomyces cerevisiae

21 January 2018

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The enhancer of decapping proteins, Edc1p and Edc2p, bind RNA and stimulate the activity of the decapping enzyme

21 January 2018

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A divergent Sm fold in EDC3 proteins mediates DCP1 binding and P-body targeting

21 January 2018

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Genome-wide protein interaction screens reveal functional networks involving Sm-like proteins

21 January 2018

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Isolation and mapping of self-assembling protein domains encoded by the Saccharomyces cerevisiae genome using lambda repressor fusions

21 January 2018

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Structural basis for the mutually exclusive anchoring of P body components EDC3 and Tral to the DEAD box protein DDX6/Me31B

21 January 2018

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Targeted mRNA degradation by deadenylation-independent decapping.

21 January 2018

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YRA1 autoregulation requires nuclear export and cytoplasmic Edc3p-mediated degradation of its pre-mRNA.

21 January 2018

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The decapping activator Lsm1p-7p-Pat1p complex has the intrinsic ability to distinguish between oligoadenylated and polyadenylated RNAs

21 January 2018

1 reference

Mutations in the Saccharomyces cerevisiae LSM1 gene that affect mRNA decapping and 3' end protection

21 January 2018

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Mutations in trans-acting factors affecting mRNA decapping in Saccharomyces cerevisiae

21 January 2018

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Lsm proteins bind and stabilize RNAs containing 5' poly(A) tracts

21 January 2018

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Isolation of the gene encoding yeast single-stranded nucleic acid binding protein 1.

21 January 2018

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Saccharomyces cerevisiae SSB1 protein and its relationship to nucleolar RNA-binding proteins

21 January 2018

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Sbp1p affects translational repression and decapping in Saccharomyces cerevisiae

21 January 2018

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Proteome survey reveals modularity of the yeast cell machinery

21 January 2018

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Functional organization of the yeast proteome by systematic analysis of protein complexes

21 January 2018

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Stm1 modulates mRNA decay and Dhh1 function in Saccharomyces cerevisiae

21 January 2018

1 reference

Stm1p, a G4 quadruplex and purine motif triplex nucleic acid-binding protein, interacts with ribosomes and subtelomeric Y' DNA in Saccharomyces cerevisiae.

21 January 2018

1 reference

Stm1p, a ribosome-associated protein, is important for protein synthesis in Saccharomyces cerevisiae under nutritional stress conditions

21 January 2018

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Upf1 phosphorylation triggers translational repression during nonsense-mediated mRNA decay

21 January 2018

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Aberrant mRNAs with extended 3' UTRs are substrates for rapid degradation by mRNA surveillance

21 January 2018

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Binding of a novel SMG-1-Upf1-eRF1-eRF3 complex (SURF) to the exon junction complex triggers Upf1 phosphorylation and nonsense-mediated mRNA decay

21 January 2018

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Nonsense-mediated mRNA decay in mammalian cells involves decapping, deadenylating, and exonucleolytic activities

21 January 2018

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Identification of a novel component of the nonsense-mediated mRNA decay pathway by use of an interacting protein screen

21 January 2018

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Human proline-rich nuclear receptor coregulatory protein 2 mediates an interaction between mRNA surveillance machinery and decapping complex

21 January 2018

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Inhibition of nonsense-mediated mRNA decay (NMD) by a new chemical molecule reveals the dynamic of NMD factors in P-bodies

21 January 2018

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Quality control of eukaryotic mRNA: safeguarding cells from abnormal mRNA function

21 January 2018

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Tethering KSRP, a decay-promoting AU-rich element-binding protein, to mRNAs elicits mRNA decay

21 January 2018

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PUF proteins bind Pop2p to regulate messenger RNAs

21 January 2018

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Disruption of GW bodies impairs mammalian RNA interference

21 January 2018

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Inhibition of translational initiation by Let-7 MicroRNA in human cells

21 January 2018

1 reference

A crucial role for GW182 and the DCP1:DCP2 decapping complex in miRNA-mediated gene silencing

21 January 2018

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Regulation by let-7 and lin-4 miRNAs results in target mRNA degradation

21 January 2018

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mRNA degradation by miRNAs and GW182 requires both CCR4:NOT deadenylase and DCP1:DCP2 decapping complexes

21 January 2018

1 reference

Staufen- and FMRP-containing neuronal RNPs are structurally and functionally related to somatic P bodies

21 January 2018

1 reference

The yeast EDC1 mRNA undergoes deadenylation-independent decapping stimulated by Not2p, Not4p, and Not5p

21 January 2018

1 reference

Transcript-specific decapping and regulated stability by the human Dcp2 decapping protein

21 January 2018

1 reference

DNA polymerase beta-like nucleotidyltransferase superfamily: identification of three new families, classification and evolutionary history

21 January 2018

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A family of poly(U) polymerases

21 January 2018

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Efficient RNA polyuridylation by noncanonical poly(A) polymerases

21 January 2018

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Identification, cloning, and functional analysis of the human U6 snRNA-specific terminal uridylyl transferase

21 January 2018

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Unconventional processing of the 3' termini of the Epstein-Barr virus DNA polymerase mRNA.

21 January 2018

1 reference

Uridine addition after microRNA-directed cleavage

21 January 2018

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Zcchc11-dependent uridylation of microRNA directs cytokine expression

21 January 2018

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Functional genomic, computational and proteomic analysis of C. elegans microRNAs

21 January 2018

1 reference

Lin28 recruits the TUTase Zcchc11 to inhibit let-7 maturation in mouse embryonic stem cells

21 January 2018

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Lin28 mediates the terminal uridylation of let-7 precursor MicroRNA

21 January 2018

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TUT4 in concert with Lin28 suppresses microRNA biogenesis through pre-microRNA uridylation

21 January 2018

1 reference

LIN-28 and the poly(U) polymerase PUP-2 regulate let-7 microRNA processing in Caenorhabditis elegans

21 January 2018

1 reference

Effect of 3' terminal adenylic acid residue on the uridylation of human small RNAs in vitro and in frog oocytes

21 January 2018

1 reference

3'-Terminal RNA structures and poly(U) tracts inhibit initiation by a 3'-->5' exonuclease in vitro

21 January 2018

1 reference

Cid1, a fission yeast protein required for S-M checkpoint control when DNA polymerase delta or epsilon is inactivated

21 January 2018

1 reference

Decapping reaction of mRNA requires Dcp1 in fission yeast: its characterization in different species from yeast to human

21 January 2018

1 reference

Multiple functions for the poly(A)-binding protein in mRNA decapping and deadenylation in yeast

13 December 2024

1 reference

Saccharomyces cerevisiae Elongator mutations confer resistance to the Kluyveromyces lactis zymocin

13 December 2024

series ordinal

112

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13 December 2024

Identifiers

DOI

10.1002/WRNA.44

1 reference

25 August 2017

1 reference